Glyma02g16430 - SoyBase

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Report for Sequence Feature Glyma02g16430

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14830641
stop:	14835890
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63240	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr3:23364411-23366876 REVERSE LENGTH=547	SoyBase	E_val: 0	ISS
GO:0032957	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process	SoyBase	N/A	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0565	KOG	Inositol polyphosphate 5-phosphatase and related proteins	JGI		ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PTHR11200:SF29	Panther	INOSITOL PHOSPHATASE SKIP	JGI		ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_G7IDM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Type I inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7IDM2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336CFB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336CFB related cluster n=1 Tax=unknown RepID=UPI0002336CFB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16430

Paralog	Evidence	Comments
Glyma10g03411	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g145600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g16430

Limit To All Plant Sequences

>Glyma02g16430.1   sequence type=CDS   gene model=Glyma02g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGATGAGAACTCGAAGAAAAGCAAGCTTTCATGGCCCAAAACGTTGGTCATGAAGTGGTTCAATATTAAGAGCAAAAATGAGGACTTTCAGGCAGATGATGTCCTCTACGCAGGTGTCAATGAAGAGTGGAGGAACAACTGTTCACAGAGGGATGAAGACGCTATCAAGAGAACCAAAACAGAGAGAGCAAAGAAGAGACACTCAGATAGAATGCGGCGAGGTAAAATTGACCGTGATGCAGCTCAGGTTACAGATGTGCATAACTATAGAATCTTTGCTGCCACTTGGAATGTAGCTGGAAAATCTCCTCCAAGTTATTTGAGTCTGGAAGATTGGCTTCACTCTTCTGCTCCTGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTCAATGCGGGTAATATTTTGGGCACAGAAGACAATGGCCCTGCCAGAAAGTGGCTAGCTCTTATTAGGAAGACCCTGAATAGTCTTCCTGGAACAAGCGGGGAATGCCACACTACTTCACCGCTTCCTGACCCTATTGTAGAGTTAGATGCTGATTTTGAGGGATCAATGAGGCAGAAGACGACCTCTTTCTTACATCGCCGATCGTTCCAATCCTTGAGTCATAGTATGAGAATGGACAATGAGATGTCACTACCCCAAGCATGCCTTGATCGTCGTCTCAGTGTCTGTGATAGAATGATGTTTGGTCACAGGACAAGTGATTATGACCCCAGTTATAGATGGGCTTCCTCGGACGATGAAAACGGCCCTAGCGACTCCCCAGTCGTAACACATTATTCACCAATGACATATAGATGTTGTTTCTCTATGGAGGATAGAGATAGACAGACAGGGAAGTCAAGATACTGTTTGGTTGCTAGTAAGCAAATGGTTGGGATATTTCTAACAGTTTGGGTGAAAAGTGATATAAGAGATGATGTTCTCAATATGAAAGTGTCTTGTGTTGGCAGAGGATTAATGGGATATCTTGGAAACAAGGGTTCAATATCAATTAGCATGTCTTTGCACCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGACTTCTGGACAAAAGGAAGGTGATGAGCTAAGGAGAAATTCAGATGTAATGGAGATTCTCAGAAAGACAAGGTTTCCCCGGGTTCAAGGCATGGGTGATGAGAGTTCTCCTCAGACAATTCTGGATCATGATCGAATAATTTGGCTGGGGGATTTAAATTATCGGATAGCCCTTTCTTACCGTGCAGCAAAGGCTCTTGTTGAGATGCATAATTGGAAGGTTCTGTTGGAGAATGACCAGCTACATATAGAGCGGAGACAAGGTCGGGTCTTTGAAGGATGGAATGAAGGGAAAATATATTTCCCTCCCACATACAAGTATTCAAACAATTCAGATAGATATGCAGGTGATGAGAGACAGTCAAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATCTTGTGGTATGGAAGAGGCCTCCGCCAATTATCGTATGTTCGTGGGGAGTCAAGATTCTCGGATCATAGACCAGTTTATAGCATGTTTCTGGCAGAAGTTGAGTCTATTAGCCGTAACCGAATAAAGAAATGCTCTAGTTGCTCCAGTTCAAGGATTGAAGTAGAAGAGTTGTTGCCTCATTCACACGGTTACAGTTACACTGATCTGAGTTTCTTCTGA

Predicted protein sequences of Glyma02g16430

Limit To All Plant Sequences

>Glyma02g16430.1   sequence type=predicted peptide   gene model=Glyma02g16430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDENSKKSKLSWPKTLVMKWFNIKSKNEDFQADDVLYAGVNEEWRNNCSQRDEDAIKRTKTERAKKRHSDRMRRGKIDRDAAQVTDVHNYRIFAATWNVAGKSPPSYLSLEDWLHSSAPADIYVLGFQEIVPLNAGNILGTEDNGPARKWLALIRKTLNSLPGTSGECHTTSPLPDPIVELDADFEGSMRQKTTSFLHRRSFQSLSHSMRMDNEMSLPQACLDRRLSVCDRMMFGHRTSDYDPSYRWASSDDENGPSDSPVVTHYSPMTYRCCFSMEDRDRQTGKSRYCLVASKQMVGIFLTVWVKSDIRDDVLNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVQGMGDESSPQTILDHDRIIWLGDLNYRIALSYRAAKALVEMHNWKVLLENDQLHIERRQGRVFEGWNEGKIYFPPTYKYSNNSDRYAGDERQSKQKRRTPAWCDRILWYGRGLRQLSYVRGESRFSDHRPVYSMFLAEVESISRNRIKKCSSCSSSRIEVEELLPHSHGYSYTDLSFF*

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