Glyma02g16380 - SoyBase

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Report for Sequence Feature Glyma02g16380

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14783926
stop:	14792300
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03080	AT	Annotation by Michelle Graham. TAIR10: kinase interacting (KIP1-like) family protein \| chr1:731794-737332 REVERSE LENGTH=1733	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG0962	KOG	DNA repair protein RAD50, ABC-type ATPase/SMC superfamily	JGI		ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF97	Panther	MYOSIN K	JGI		ISS
PF07765	PFAM	KIP1-like protein	JGI		ISS
UniRef100_G7IDL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Centromere protein n=1 Tax=Medicago truncatula RepID=G7IDL0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336D4B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336D4B related cluster n=1 Tax=unknown RepID=UPI0002336D4B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16380

Paralog	Evidence	Comments
Glyma10g03450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g145200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g16380

Limit To All Plant Sequences

>Glyma02g16380.1   sequence type=CDS   gene model=Glyma02g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACTAAGTCTCAAGCAAATTCCAGGAGAATGTATTCATGGTGGTGGGACAGCCACATAAGCCCCAAAAATTCAAAATGGCTCCAGGAAAATCTCACAGATATGGATGCCAAGGTGAAGCAAATGATTAAGCTTATTGAAGAAGATGCAGATTCCTTTGCCAGGAGAGCAGAAATGTATTATAAAAAACGCCCAGAGCTTATGAAAATGGTTGAAGAGTTTTACAGGGCATATCGGGCATTGGCTGAGAGATATGATCATGCAACTGGAGTGATCCGCCACGCCCATAAGACCATGGCTGAAGCATTTCCTAATCAAGTTCCTATGATGTTGACAGATGATTTACCTGCCATTTCTCCTACGGAGACTGAGCCACATACTCCAGAAATGCGACACCCTTCACGTGCATTTCTTGATCCAGATGAACCACAAAAGGATGCTTCTGCTCATTTCCATGCTATCAAAAGAAATGGTGGTTATACTGGTGAACCTGATTCTCCTTTGAACAAAACCGGTTTGAAACAGCTCAATGATCTCTACATCCCTGGAGAACAAGAAAATCTTCCAAAGTTTGCTAGAAGGGGGCTCAATTTTTTTGAGACGCAGGAGGAGAGTAATGAGCAAAACAGTGGAAGCAACAACACTTTGTCTGAGTCTGAATGCGTGACAAAAGCTGAGACAGAAATTTTGGCCTTGAAGAAAGCCATTGCCAAATTAGAAGATGAAAAGGAAGCTGGCTTGCTTCAGTATCAGCAGAGTTTGGAGAAAATGTCTAATCTCAAGTTAGAAGTGTCTACTGCACAAGAGAATTCTCGAAGACTCGATGAGCGAGCAAGTAAAGCTGAAGCTGAAGTTCAAGCCTTGAAGGAAGCCCAAATCAAATTACAGGCTGAAAGTGAAGCTAGTCTTCTTCAGTACCAGGAATGCTTGGAGAAAATATCTAATCTGGAGAAAAATATTTCTTCTTTGCAAAAGGAAGCAGGAGAACTTAATGAACGAGCTACTAAAGCTGAAACTGAGACTGAGTCCCTAAAGCAGGAACTTGCTAGAGTAGAAGCTGAAAAGGAAGCTACCCTTGTTCAATATAACCAGTGCTTGGAGACAATATCAAAACTGGAGGAGAGAATAAAAGAAGCTGAGGAGAATGCAAGAAGGATTAAGGAGCATGCCGATATAGCAGAAAAAGAAATCGAAGCTTTGGAATTACAAGTTACTAAACTTAATGAAGAAAAGGAAGATGCTGCTCTCCATTATCAGCAATGCATGGAGATAATTTCCAGTTTGGAGTATAAGCTCTCTTGTGCTGAAGAGGAGGTGCATAGGCTAAATTCCAAGATAGTTGATGGGGTTGAAAAGTTACAGAGTTCAGAACAGAAATGTCTTCTCTTGGAGACATCAAATCACACTCTGCAGTCAGAATTACAATCTTTGGCACAAAAAGTGGGGTCTCAAAGTGAAGAACTTAATGAGAAGCAGCAGGAATTGGGTAGACTTTGGGGTTGCATACAAGAGGAGAGACTGCGATTCATTGAGGCTGAAACTGCTTTCCAAACTCTTCAGCAGTTGCATTCTCAGTCTCAGGAAGAGCTTAGATCTCTTGCTTCTGAACTTAACAGTAAAGTGGAAATACTGGGGAATGTGGAATCTCGTAAGCAGGCTTTAGAGGATGAAGTACACAGGGTGAGTGAGGAAAACAAAATTCTAAATGAGGTCAAAATTTCTTCATCTTTGTCTATAAAAAATTTGCAGGATGAGATTTTGAATTTGAGGGAGACAATAGAGAAAGTTGAACAGGAGGTGGAGCTTCGAATTGATGAAAGAAATGCTCTTCAGCAAGAAATTTACTGTCTTAAAGAGGAGCTTAATGATGTGAATAAAAAACATGAAGCCATGATAGAGGAAGTCCGGTCAACTGACTTAGACCCACAGTGCTTTGGATCATCTGTGAAAAAATTGCAAGATGAGAACTTAAAGCTGAAGGAAACATGTGAGGCTGACAAAGGAGAGAAAGAAGCTCTTTTGGTAAAATTGGAAACCATGGAGAAACTTCTGGAGAAAAATACTGTTTTAGAGAATTCCCTTTCAGACTTGAATGCTGAGCTGGATAGCGTCAGAGGAAAGGTAAATGTGTTGGAAGAAACATGCCAATCTCTACTAGTGGAGAAATCAAATCTTGCTGCTGAGAAGGCCACCTTGTTTTCTCAGTTACAATCCACAACTGAAAAGCTGGAGAAGCTCTCAGAAAAGAGCAACCTATTGGAAAATTCACTATTTGATGTGAATGCTGAACTTGAAGGGTTAAGGGTGAAGTCCAAGGTATTAGAAGACACATGTCGATCACTTGACCATGAGAAGTCCAGTATCTGTCAAGAGAAAGAAACCTTAGTTTCACAGTTGAACATAACTCATCAAACACTGAAAGATCTTGAGAAACTGCACAGTGAATTGGAATTGAAGCATTTGGAACTAAAAGGAGAAAGGGAGTCTGCACTTCAAAAGGTAGAAGAGCTACTAGTTTCCCTATATTCTGAGAGGGAAGAGAATTCCAGAGTTTTGAAATTGAATGAAGATGAATTGGCTGAGAAGGAATTACAAATTCTTATTCTACAAGAAGATGCAAATTGCAAGAAAAAGGAATATGAGGAGGAACTGGACAGAGCTATACATGCTCAACTTGAAATTTTCATCTTGCAGAAATGTATTGATGATTTGGAGAAAAAGAACCTCTCCCTTCTAGTTGAGTGTCAGAGACTTTTGGAGGCTTCCAAAATGTCGGACAAAATGATATCTAAATTGGAGACTGAAAATGTTCAAAAGCAGGTTGATGTGAATTCTCTGTCTGAGAAAATTAAAATACTAAGGATTGGCTTGATTCAGGTGTTGAAGACTCTTGACAATAACAGTGGGCATTTCGGTGAGGATATGCTTGAAGAAGACCAAATGCTCCTGAACCACATATATGGAAAACTTCAGGAGAGGCAGAAATCTTTTGACACAATTTTCAATGGAAGCCAACAAATGGCCATTGAGAATTCAATTCTGATTACATTCCTAGAGCAGTTGAAACTAAAGGTGGAAAATCTTGTGACACAAAGAGACACCCTTGATGAGGAGTTCAATATCCAGTCTAAGCAGTTCTTGGCATTGCAAATAGAGGTCCAAAAGATATTGCAGAAGAATCAGGAGTTGGAGTTGACAATAAGCAAAGGAGAAGAGAGAATGGAAGTAATGACAATTGAGACAGACAATCTACGAAAGCAGTTGTCAGACTTGGAAAAGAGTCACAACAATTTACAGGAGGATAGTTGCAAGATATTGGAAGAGAAGAAGTCCTTGACAAGAAGATTTCTAGATCTGGGTGAAGAGAAAAGTAACTTGGAAGAAGAAATATGCGTCATGATCCATGAGGCAATAGCTCAATCTAATCTTTCCCTGATTTACGAGAATATTATCTTTGAAAAACTCATGGAACTTAAAGAGCTAGGTGAAGATCTTGATAAACATTGTTCAGCAAATAATGACCTTGATGAGAGATTAAGAGTAATGATGTGCAAATTAGAAAATGCAGAAATGGAAAATTCACATCTTAAAGAGTCATTCGTAAAGTCAAATGTTGAACTACATTTAGTTGAATCTATCAATGGTCAATTGAGCTGTCAGATTAGGGATGAAAGGGAGATGTTGCATCTAAAGGAAAATGAACTTTTGGAAGCAGCTGAGATGTTTCATGTTTTACATACTGAGAAAACAGAATTGCAAAGAATGGTGGAAGATCTGAAGATTAAATATGATGAAGCTAGGGTGATGCTTGAAGAACAGGCTAATCAAATTTTGAAATTGTCCTCAGACAAGGATCATCAAAATGAAGAGCTCCTATGCCTGTCTGAAGTGAATCAGAAGTTGGAGTCTGAAATGGGGTACCTACGTCAAGAGCTTGGAGAAACTAAACTGAGGGAAAAGAAGCTAGGTGATGAAGTACTTAAGGGAACAAATGAGATTGAACAATGGGAAACTCAGGCTTCAACACTCTTTGCTGAACTGCAGATTTCTGCTGTCAATGAAACATTATTTGAAGGAAAGGTCTGTGAACTAAATGAGATGTTTCGTGTTTTACATACTGAGAAAACAGAATTGCAAAGAATGGTGGAAGATCTGAAGACTAAATATGATGAAGCCAGGGTTATGCTTGAGGAAAAGGCTAGTCGAATTTTGAAATTGTCCTCAGACAAGGATCGTCAAAATGAAGAGCTCATATGCCTGTGTGAAGTGAATCAGAAGTTGGAGTCTGAAATCGGGTACCTACGTCGAGAGCTCGGAGATACTAAACTGAGGGAAAAGAAGCTAGGTGATGAAGTACTTAAGGGAACAAATGAGATTGAACAATGGGAAACTCAGGCTTCAACACTCTTTGCTGAACTGCAGATTTTTGCTGTCAATGAAACATTATTTGAAGGAAAGGTTTGTGAGCTAGCTGATGCATGTGAGAATCTTGAACGTAGAAACTACTCCAAAGACATGGAAAGTGAGCATCTGAAAGAAAGAGTTAGCGAGCTGGAAGTTGAAAATGGAAGACTGTGTGAACAATTAATTGCTTATGTCCCTGCTGTCAGTGCTTTGAATGATTGTATAACATCTCTGGAGATGCAGACTCTTGCACATGAAAAGCCTCATGACCATGAAGAATCAAAGGTGAATAGTTTGGTGAATAATGAATGCACTGAAAATGGTCAACAAACAGATGAAGATCGGACTGTTGTGGCACCAGACGCACTCCCTTACTTCCAAGACATGCAGAGAAGGATCAATGCAATTGCAATGGCAGTTAAGCAATTAAATGAAAGTTTTAAATCTAAGCATGTAGAGAACATGCAAGCAAGCAAGCATGTTACTCAAGCAGATCAAGCAAGGCCAGATACCCCGGTTACCGAGATTGAAGTTCTGCCAAAAGACATCATGCTTGATCAAATATCTGAATGTTCATCATATGGGATAAGTAGGAGGAGAGAAATTCTTGAGGCTGATGATCAGATGCTTGAGTTGTGGGAGACAGCAGATAAGGATGCCGCAATTGGCAAGCAAGCTGAAAAGACACAGAAGATGGTTGCTGAAGCTGCTGGCAATCATCAAAGAGGAGCAACCATGGAACTCAGAAATAAATATCCTTCAACAGATTCCTTGGTGGAAAAGGAGTTGAGTGTGGACAAGTTAGAGGTCTCAAGAAGATTGACACTACCACGCGAAGAAGGGAACCAGAGCAAGATTTTGGAGAGACTTGATTCTGATGCACAGAAGTTGACAAACCTCCAAATCACCGTACAAGATTTGATGAAGAAGGTAGAGATTAATGAGAGGAGCACAAAGGGAAAAGGTGTTGAGTTTGATGAGGTGAAAGGGCAGCTTGAAGCAGCTCAGGAGAACATCACAAAGTTGTTTGACACCAACCGCAAGTTGATGATGAATATGGAAGAGGGTACCTTGTCTTCTGTTGGGAAGGATGCAGCAGAGTCGGGTGAAAGTGGAAGTGTCAGCAGAAGGAGAGTTTCAGAACAGGCACGTAGAGAATCAGAAAAAATAGGACAACTGCATTTGGAGGTGCAAAGACTGCAGTTTTTACTGCTGAAACTAGGTGATGGAAAAGAAATCAAAGAGAAAACAAAAATGACTGATCGAAGTCCACGAGTGCTTTTGCGAGATTATATCTATGGTGGGATGAGAACCAACAACCAAAAGAAGAAGAAAAAGCTACCCTTTTGTGCATGTGTGCGACCTCCCACCAAGGGAGATTGA

Predicted protein sequences of Glyma02g16380

Limit To All Plant Sequences

>Glyma02g16380.1   sequence type=predicted peptide   gene model=Glyma02g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATKSQANSRRMYSWWWDSHISPKNSKWLQENLTDMDAKVKQMIKLIEEDADSFARRAEMYYKKRPELMKMVEEFYRAYRALAERYDHATGVIRHAHKTMAEAFPNQVPMMLTDDLPAISPTETEPHTPEMRHPSRAFLDPDEPQKDASAHFHAIKRNGGYTGEPDSPLNKTGLKQLNDLYIPGEQENLPKFARRGLNFFETQEESNEQNSGSNNTLSESECVTKAETEILALKKAIAKLEDEKEAGLLQYQQSLEKMSNLKLEVSTAQENSRRLDERASKAEAEVQALKEAQIKLQAESEASLLQYQECLEKISNLEKNISSLQKEAGELNERATKAETETESLKQELARVEAEKEATLVQYNQCLETISKLEERIKEAEENARRIKEHADIAEKEIEALELQVTKLNEEKEDAALHYQQCMEIISSLEYKLSCAEEEVHRLNSKIVDGVEKLQSSEQKCLLLETSNHTLQSELQSLAQKVGSQSEELNEKQQELGRLWGCIQEERLRFIEAETAFQTLQQLHSQSQEELRSLASELNSKVEILGNVESRKQALEDEVHRVSEENKILNEVKISSSLSIKNLQDEILNLRETIEKVEQEVELRIDERNALQQEIYCLKEELNDVNKKHEAMIEEVRSTDLDPQCFGSSVKKLQDENLKLKETCEADKGEKEALLVKLETMEKLLEKNTVLENSLSDLNAELDSVRGKVNVLEETCQSLLVEKSNLAAEKATLFSQLQSTTEKLEKLSEKSNLLENSLFDVNAELEGLRVKSKVLEDTCRSLDHEKSSICQEKETLVSQLNITHQTLKDLEKLHSELELKHLELKGERESALQKVEELLVSLYSEREENSRVLKLNEDELAEKELQILILQEDANCKKKEYEEELDRAIHAQLEIFILQKCIDDLEKKNLSLLVECQRLLEASKMSDKMISKLETENVQKQVDVNSLSEKIKILRIGLIQVLKTLDNNSGHFGEDMLEEDQMLLNHIYGKLQERQKSFDTIFNGSQQMAIENSILITFLEQLKLKVENLVTQRDTLDEEFNIQSKQFLALQIEVQKILQKNQELELTISKGEERMEVMTIETDNLRKQLSDLEKSHNNLQEDSCKILEEKKSLTRRFLDLGEEKSNLEEEICVMIHEAIAQSNLSLIYENIIFEKLMELKELGEDLDKHCSANNDLDERLRVMMCKLENAEMENSHLKESFVKSNVELHLVESINGQLSCQIRDEREMLHLKENELLEAAEMFHVLHTEKTELQRMVEDLKIKYDEARVMLEEQANQILKLSSDKDHQNEELLCLSEVNQKLESEMGYLRQELGETKLREKKLGDEVLKGTNEIEQWETQASTLFAELQISAVNETLFEGKVCELNEMFRVLHTEKTELQRMVEDLKTKYDEARVMLEEKASRILKLSSDKDRQNEELICLCEVNQKLESEIGYLRRELGDTKLREKKLGDEVLKGTNEIEQWETQASTLFAELQIFAVNETLFEGKVCELADACENLERRNYSKDMESEHLKERVSELEVENGRLCEQLIAYVPAVSALNDCITSLEMQTLAHEKPHDHEESKVNSLVNNECTENGQQTDEDRTVVAPDALPYFQDMQRRINAIAMAVKQLNESFKSKHVENMQASKHVTQADQARPDTPVTEIEVLPKDIMLDQISECSSYGISRRREILEADDQMLELWETADKDAAIGKQAEKTQKMVAEAAGNHQRGATMELRNKYPSTDSLVEKELSVDKLEVSRRLTLPREEGNQSKILERLDSDAQKLTNLQITVQDLMKKVEINERSTKGKGVEFDEVKGQLEAAQENITKLFDTNRKLMMNMEEGTLSSVGKDAAESGESGSVSRRRVSEQARRESEKIGQLHLEVQRLQFLLLKLGDGKEIKEKTKMTDRSPRVLLRDYIYGGMRTNNQKKKKKLPFCACVRPPTKGD*

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