Glyma02g16320 - SoyBase

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Report for Sequence Feature Glyma02g16320

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14732037
stop:	14734428
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03070	AT	Annotation by Michelle Graham. TAIR10: Bax inhibitor-1 family protein \| chr1:730148-731379 FORWARD LENGTH=247	SoyBase	E_val: 8.00E-137	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0016595	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamate binding	SoyBase	N/A	ISS
KOG2322	KOG	N-methyl-D-aspartate receptor glutamate-binding subunit	JGI		ISS
PTHR23291	Panther	BAX INHIBITOR-RELATED	JGI		ISS
PTHR23291:SF9	Panther	GLUTAMATE-/ASPARTATE-BINDING PEPTIDE-RELATED	JGI		ISS
PF01027	PFAM	Uncharacterised protein family UPF0005	JGI		ISS
UniRef100_G7IDK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BI1-like protein n=1 Tax=Medicago truncatula RepID=G7IDK0_MEDTR	SoyBase	E_val: 2.00E-153	ISS
UniRef100_I1JF74	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JF74_SOYBN	SoyBase	E_val: 8.00E-171	ISS

Expression Patterns of Glyma02g16320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16320

Paralog	Evidence	Comments
Glyma10g03510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g144700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16320

Limit To All Plant Sequences

>Glyma02g16320.2   sequence type=transcript   gene model=Glyma02g16320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTCCCACACGTGCCTCACGGTGGTTATTTATATCATCCTCATTCATTCCACGCCTGCAAGATCCAAAAGCGCTAAATTACTTTCTTTCCATTTTCCTTCGTTTTCTCTCTCTTTCTCAGTTTCTCAGTTTCTCAGTCATCACCATCGCAGCAGCAAGATGTGGAACCAACCATTCGGAAAAACCGATTTGGAAAGCGGTTCTCGGCCTCTGTATCCGATGATGCTCGAGAGCCCTGAACTGCGGTGGTCGTTCATCAGAAAAGTGTACTCCATAATCGCCATCCAGTTGCTCGTAACCATCGTCGTCGGCGCCGTCGTCGTCACCGTCCGCCCAATCAGTGTCTTCTTCGCCACCACCGGCGCCGGACTGGCTCTCTACATCGTCCTCATTTTTGTTCCCTTTATAACGTTGTGTCCACTTTACTACTATTCCCAGAAGCATCCCGTCAATTACTTGCTCCTAGGGGTTTTCACTGTGTCTCTTGGATTTGTCGTTGGATTGAGTTGCGCCTTTACTAGCGAGAAAGTTATTCTGGAAGCTGTCATATTGACTGCTGTGGTGGTGATTGGTCTGACTCTATACACATTTTGGGCTGCAAGGAGAGGCCATGATTTCAACTTCCTTGGCCCCTTCTTGTTTGGTGCTGTGCTAGTTCTCATGGTCTTTGCTCTGATTCAGGTATTATGATCTTCAAACACTGTTGGTTCACATGTATTATGCTATTGTAATTATTTTGGTTTAATCTTTATAGCCTTTTCTTTGCTTTCTCTTGCAGGTTCTGTTTCCACTGGGTAAATTGTCCGTGATGATCTATGGTTGCTTGGCAGCCATTATATTTTGTGGCTACATCATCTATGACACAGACAACCTGATCAAGAGATACTCGTACGATGAATACATCTGGGCTTCGATCTCCTTGTATCTGGACATCATCAACCTCTTCCTGTCTCTGCTCACTATTTTTAGAGCCGCTGATAGTTAGATCATTGTGTCATATTCAAATATTCCGTTCCTTGCCTGCACATTATTTGTTTTCTGTGATGAGGGTGGGTTCTGAAAAACAAATTCTTGTCAATTAATAAATCTTTGGGGCTTGCTTTGTCGCAAGGTGTCTTGTGTATACAATGGATTATTGTCAAAAGTTGTTCATAAATAGTGGATTAGCGATGAAATTTTGCACTTAATTATAAACACGACTGTCCCTTTCTTTTGTGTGTTCCTTATTTTCTGGTTATGATGATTGTCGGCAAATTGTCTATATTGGTGTACCAAGTTCTGCCTTTCATGCACTCTGATGCTTTGGCCA

Coding sequences of Glyma02g16320

Limit To All Plant Sequences

>Glyma02g16320.1   sequence type=CDS   gene model=Glyma02g16320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAACCAACCATTCGGAAAAACCGATTTGGAAAGCGGTTCTCGGCCTCTGTATCCGATGATGCTCGAGAGCCCTGAACTGCGGTGGTCGTTCATCAGAAAAGTGTACTCCATAATCGCCATCCAGTTGCTCGTAACCATCGTCGTCGGCGCCGTCGTCGTCACCGTCCGCCCAATCAGTGTCTTCTTCGCCACCACCGGCGCCGGACTGGCTCTCTACATCGTCCTCATTTTTGTTCCCTTTATAACGTTGTGTCCACTTTACTACTATTCCCAGAAGCATCCCGTCAATTACTTGCTCCTAGGGGTTTTCACTGTGTCTCTTGGATTTGTCGTTGGATTGAGTTGCGCCTTTACTAGCGAGAAAGTTATTCTGGAAGCTGTCATATTGACTGCTGTGGTGGTGATTGGTCTGACTCTATACACATTTTGGGCTGCAAGGAGAGGCCATGATTTCAACTTCCTTGGCCCCTTCTTGTTTGGTGCTGTGCTAGTTCTCATGGTCTTTGCTCTGATTCAGGTTCTGTTTCCACTGGGTAAATTGTCCGTGATGATCTATGGTTGCTTGGCAGCCATTATATTTTGTGGCTACATCATCTATGACACAGACAACCTGATCAAGAGATACTCGTACGATGAATACATCTGGGCTTCGATCTCCTTGTATCTGGACATCATCAACCTCTTCCTGTCTCTGCTCACTATTTTTAGAGCCGCTGATAGTTAG

>Glyma02g16320.2   sequence type=CDS   gene model=Glyma02g16320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAACCAACCATTCGGAAAAACCGATTTGGAAAGCGGTTCTCGGCCTCTGTATCCGATGATGCTCGAGAGCCCTGAACTGCGGTGGTCGTTCATCAGAAAAGTGTACTCCATAATCGCCATCCAGTTGCTCGTAACCATCGTCGTCGGCGCCGTCGTCGTCACCGTCCGCCCAATCAGTGTCTTCTTCGCCACCACCGGCGCCGGACTGGCTCTCTACATCGTCCTCATTTTTGTTCCCTTTATAACGTTGTGTCCACTTTACTACTATTCCCAGAAGCATCCCGTCAATTACTTGCTCCTAGGGGTTTTCACTGTGTCTCTTGGATTTGTCGTTGGATTGAGTTGCGCCTTTACTAGCGAGAAAGTTATTCTGGAAGCTGTCATATTGACTGCTGTGGTGGTGATTGGTCTGACTCTATACACATTTTGGGCTGCAAGGAGAGGCCATGATTTCAACTTCCTTGGCCCCTTCTTGTTTGGTGCTGTGCTAGTTCTCATGGTCTTTGCTCTGATTCAGGTATTATGA

Predicted protein sequences of Glyma02g16320

Limit To All Plant Sequences

>Glyma02g16320.1   sequence type=predicted peptide   gene model=Glyma02g16320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNQPFGKTDLESGSRPLYPMMLESPELRWSFIRKVYSIIAIQLLVTIVVGAVVVTVRPISVFFATTGAGLALYIVLIFVPFITLCPLYYYSQKHPVNYLLLGVFTVSLGFVVGLSCAFTSEKVILEAVILTAVVVIGLTLYTFWAARRGHDFNFLGPFLFGAVLVLMVFALIQVLFPLGKLSVMIYGCLAAIIFCGYIIYDTDNLIKRYSYDEYIWASISLYLDIINLFLSLLTIFRAADS*

>Glyma02g16320.2   sequence type=predicted peptide   gene model=Glyma02g16320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNQPFGKTDLESGSRPLYPMMLESPELRWSFIRKVYSIIAIQLLVTIVVGAVVVTVRPISVFFATTGAGLALYIVLIFVPFITLCPLYYYSQKHPVNYLLLGVFTVSLGFVVGLSCAFTSEKVILEAVILTAVVVIGLTLYTFWAARRGHDFNFLGPFLFGAVLVLMVFALIQVL*

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