Report for Sequence Feature Glyma02g16250
Feature Type: gene_model
Chromosome: Gm02
Start: 14644976
stop: 14648746
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g16250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G63370 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:23402080-23405180 FORWARD LENGTH=884
SoyBase E_val: 0 ISS
GO:0031425 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF150 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7ICR0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7ICR0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002336D45 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002336D45 related cluster n=1 Tax=unknown RepID=UPI0002336D45
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g16250
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma02g16250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g144100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g16250
Coding sequences of Glyma02g16250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g16250.1 sequence type=CDS gene model=Glyma02g16250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCGTTTGTGTCAAGTGGCAAATACCTCGAAGCTATTGAGCTGTATAAAGATATGAGAGTTCTTGGGGTGGCGATAGATGCTTGTACTTTTCCCTCTGTGCTTAAAGCGTGTGGTGCTCTTGGTGAAAGCCGCTTGGGGGCTGAAATCCATGGTGTGGCGGTTAAGTGTGGATATGGTGAGTTTGTGTTTGTGTGCAATGCACTTATTGCTATGTATGGGAAGTGTGGTGATCTTGGTGGGGCTAGGGTGTTGTTTGATGGGATTATGATGGAGAAAGAGGACACTGTGTCTTGGAATTCTATTATTTCGGCACATGTAGCGGAAGGGAATTGTTTGGAGGCATTGTCGCTTTTTAGAAGGATGCAGGAGGTTGGTGTTGCTAGTAATACGTATACTTTTGTTGCAGCTCTTCAGGGTGTTGAGGATCCCTCGTTTGTTAAACTGGGTATGGGGATACATGGTGCAGTATTGAAATCTAACCATTTTGCTGATGTCTATGTTGCCAATGCTTTGATTGCTATGTATGCAAAATGTGGTCGAATGGAGGACGCTGGAAGAGTTTTTGAAAGTATGCTTTGCAGGGATTATGTGTCGTGGAATACATTGCTTTCTGGTTTGGTTCAAAATGAGCTGTATAGTGATGCTCTAAATTACTTCCGGGATATGCAGAATTCTGGTCAAAAGCCTGACCAGGTGTCAGTGTTAAACTTGATTGCGGCATCTGGCCGATCGGGAAATTTATTGAAAGGGAAGGAAGTTCATGCCTATGCAATAAGAAATGGATTGGATTCTAATATGCAGATTGGGAACACGTTGGTAGATATGTATGCCAAGTGTTGTTGTGTGAAATATATGGGCCATGCTTTTGAATGTATGCATGAAAAAGACTTGATTTCTTGGACTACTATCATTGCTGGCTATGCTCAGAATGAATTCCATCTGGAAGCAATAAATTTGTTCCGGAAGGTTCAGGTGAAAGGGATGGATGTTGATCCCATGATGATTGGAAGCGTTTTGCGGGCTTGCAGTGGGTTAAAATCTAGAAACTTCATCAGAGAAATCCATGGTTATGTTTTTAAAAGAGATTTAGCTGATATAATGCTACAAAATGCCATTGTCAATGTATATGGAGAGGTTGGGCACATAGATTACGCAAGGCGTGCATTTGAATCAATTAGATCGAAAGATATTGTGTCTTGGACAAGTATGATTACCTGTTGTGTTCATAATGGACTTCCAGTTGAAGCTCTTGAACTTTTCTACTCTTTAAAACAAACTAATATTCAACCTGATTCTATAGCGATCATTAGTGCACTCTCTGCCACTGCTAATTTATCTTCATTGAAGAAAGGGAAGGAGATTCATGGATTTCTGATTAGGAAGGGTTTCTTCTTGGAGGGACCAATTGCTAGCTCTCTGGTGGACATGTATGCTTGCTGTGGAACTGTGGAGAACTCAAGAAAGATGTTTCATTCTGTAAAACAGAGAGATCTAATTTTATGGACTTCTATGATTAATGCTAACGGAATGCATGGATGTGGAAATAAGGCCATTGCGTTATTCAAGAAAATGACTGATCAAAATGTTATTCCTGATCACATTACCTTTTTGGCTTTATTATATGCATGCAGCCATTCAGGGTTGATGGTTGAAGGTAAGAGGTTTTTTGAAATTATGAAATATGGATATCAATTGGAACCCTGGCCAGAGCACTATGCCTGTATGGTCGATCTCCTCAGCCGTTCTAATTCCCTGGAAGAGGCTTACCATTTTGTGAGAAACATGCCTATCAAACCTTCTTCTGAAATCTGGTGTGCTCTTCTTGGGGCATGCCACATTCATTCTAATAAAGAATTGGGAGAGCTTGCAGCAAAGGAGCTCTTACAATCGGATACAGAGAATTCAGGAAAGTATGCACTGATATCAAACATCTTTGCAGCAGATGGAAGATGGAATGATGTTGAAGAAGTGAGGTTGAGAATGAAGGGAAATGGGTTGAAGAAAAACCCAGGATGCAGTTGGATTGAGGTTGACAACAAGATTCACACCTTCATGGCAAGGGACAAGTCTCATCCACAGACTGATGACATTTATCTAAAATTAGCTCAATTTACAAAACTTTTGGAAAAAAAAGGGGGCTATATAGCTCAAACTAAGTTTGTATTCCACAATGTTAGCGAAGAAGAGAAAACACAGATGTTATATGGACATAGTGAAAGGTTGGCACTTGGTTATGGTCTGCTTGTTACACCAAAAGGTACTTGTATTCGAATCACAAAGAACCTTCGTATTTGTGACGATTGTCATACATTCTTTAAGATAGCATCAGAAGTCTCCCAACGGCCCCTTGTTGTAAGGGATGCCAATAGGTTCCATCATTTTGAAAGAGGACTCTGTTCATGTGGAGATTTCTGGTGA
Predicted protein sequences of Glyma02g16250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g16250.1 sequence type=predicted peptide gene model=Glyma02g16250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
