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Report for Sequence Feature Glyma02g16220

Feature Type:gene_model
Chromosome:Gm02
Start:14630203
stop:14631393
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g16220
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22930AT Annotation by Michelle Graham. TAIR10: calmodulin-like 11 | chr3:8124286-8125835 REVERSE LENGTH=173 SoyBaseE_val: 2.00E-54ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0030048GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based movement SoyBaseN/AISS
GO:0051645GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi localization SoyBaseN/AISS
GO:0051646GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrion localization SoyBaseN/AISS
GO:0060151GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome localization SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR23050Panther CALCIUM BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_B9S4P7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9S4P7_RICCO SoyBaseE_val: 7.00E-68ISS
UniRef100_I1JF64UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF64_SOYBN SoyBaseE_val: 8.00E-101ISS

Expression Patterns of Glyma02g16220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16220
ParalogEvidenceComments
Glyma10g03580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16220 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g143800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g16220
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g16220
>Glyma02g16220.1   sequence type=CDS   gene model=Glyma02g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATGCATGGACAGAAGATCAAATAGCTATATTCCATGAAGCGTTTGACGTTGTTGACAAGGACTCCGACGGTTTCATTTCGGTGGACGAACTCTTATCCATTGTGCGATCATTAGAAGGAAACTCAACAAAAGAAGAAATTCGAGAAATGATTAGTGAAGTTGACATTGATGGAAATGGCCGGAGTGTAAATTTTGAAAACTTCTTGAAAATTATGGGAAGGACAATGAAGGAAAATCAGACTGAGGAGCTAAAAGACTCGTTCAAAGTATTCGACAGGGATAATGATGGATATATATCAGCAACTGAGCTGAGACAAGTAATGGTGAAATTGGGAGAGAGGCTAACAGACGAAGAAGTTGAACAAATGATTAGAGAAGCTGATTTGGATGGAGATGGTCGAGTTAGCTATGAAGAATTTGTGAGGTTTATGACGTTAAATTGA
Predicted protein sequences of Glyma02g16220
>Glyma02g16220.1   sequence type=predicted peptide   gene model=Glyma02g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANAWTEDQIAIFHEAFDVVDKDSDGFISVDELLSIVRSLEGNSTKEEIREMISEVDIDGNGRSVNFENFLKIMGRTMKENQTEELKDSFKVFDRDNDGYISATELRQVMVKLGERLTDEEVEQMIREADLDGDGRVSYEEFVRFMTLN*






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