SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g16181

Feature Type:gene_model
Chromosome:Gm02
Start:14591128
stop:14594647
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g16181
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63430AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:23420414-23422201 FORWARD LENGTH=540 SoyBaseE_val: 8.00E-104ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q2R1Y3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R1Y3_ORYSJ SoyBaseE_val: 4.00E-66ISS
UniRef100_UPI0002336D42UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336D42 related cluster n=1 Tax=unknown RepID=UPI0002336D42 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g16181
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g16181 not represented in the dataset
Glyma02g16181 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16181
ParalogEvidenceComments
Glyma10g03621 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16181 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g143400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g16181
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g16181
>Glyma02g16181.1   sequence type=CDS   gene model=Glyma02g16181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGGGTATCGTACGCGACCAGAATCTGGAGAAACATATTCACAAGCAGATGGGGTGCATGGCTGGTTTCCTTCAGATCTTCGACCGCCACCAGATGCTCACCGGAAAACGCATCTACTCCCCCAAACGCCTCCCTCCGGCCTCGCCTGAGCCGGAGAATCCCGCAGTCTCACCGGCGCGTTCAACGCCGTCGCCGGCGAGAGAGGTCACGAGTTCGGAGCCCCAGGCGAATGTTCCCACGCTTCCCGTTCTCGAATTCAAGGAAGGCACGCGGTCCTCGTGGAAGTTCTCGAGAGAAGCTCCGAGGTTGTCGCTCGACAGCAGAGCCATCGTGGACGCGAAGGGAACTCTCCACCTTCACCCGCGCGAGATCCCTCCCGAAAACGACGCCGACAAACAGCGTCGTTCCACCAGCGTCATTGCCAAGCTCATGGGCCTCGAGCCCCTACCAGATTCGGAGCCCGGACCTGGGCCCGGGCCCGTGGCGAAGCTCCAGAGATCCGCGTCCGAGTCCAGAGTCCCCAGAGATCCGCCTCTGCCCCTAACAACGCAGTGTCGTTTCTTCGACCCCAACAATTTCTTTTCTGCTCAGTTCACAACCAATGTGGTCTACGAGAATAACAACAACAACAACGCTGCCATCGAATCACGATTCGTTAATAGCAGAGTCGCCGCAGATCCACCGAAACAGAGGTTAAAGAAGAGTTTCTACGACTCCGCGGATTTCTTCCCCGAGCCGAAACACACCGTTTCGGTGTACGGAGAGATTGAGCGGAGGCTGCGGATGCGTGGGATTAACGAGCCTTCCAAGGATCTCCACACTCTGAAACACATCTTAGAAGCATTGCAGCTCAAGGGGCTTTTGCATTCCAACAACAAGCCCAACCAATCTCCCATTGTGGTTATGAAACCGGTTCGATCTGTGAACCGGACCGGGAATGATTATTCTCCCCGGTCCAGTCCTCGCCGGAGCCCCAGAGTTACAAACGAGGCTCGGAGGAGTGAACAAAATGAGCGGAATGTAAGGGGGCAAGGCAGAACACTGAGTTCGAGTCCGAACCGGAGGAAACAAGAACCGCAGAGGAGAGTGGGTGTTGATTCGAGAAGGGTGTCTCCGGTTAATTCGCCCAAGGTGAGTCCAAGGAGGAATGCAAATGCAACGTGTCAGCACGTGCCAAGTGGATCACCAAGAATGATGAGAAAAAATATTGAGCGTAAGGAGAAGGTGCTGTTGGGTGGGGCAGAGGATGAATCGTCCACCGTTTCAGACAACAGCTTCAGCACTTGTTCATATCCCGATACAGAGAGGTACAGGTCGGAAGAGTACATGGAAGGGAAAGATCTGCTGGATAGGTGCGATAAGCTTCTCAACAGCATCGCAGAAATAACAGCGGCCAACGAGTTGCAACCAAGTCCAGTATCGGTTCTTGACTCATCCTTTTACAAGGATGAGTGGGCTTCACCATCCCCGATAACCAAACGCTGCATTGATTACAAAGATCATGCGGCGGAATCAGAAGATGATATGTGGAGTGCAGCATTGTGCAGCAGCGAGGAGGCAGCGTCGGAGGATTGTGATTTCGCTTACGTGTGGGAGATTCTGCGAGCTTGCACTTACTTGCCGGAAGAGAGCGACATTTTTCTGTTACTGGAGAAGCAGCAATGTCTGAAGGGGAAAGACACCTCGAAGGCTTCGACGCTGCAGAGGAGGTTGATTTTCGACACACTCCAGGAGATCTTGAACCGGAACCAGCAATTGCCGCCGTGGAAGGCGGTATCGTGCGGCGAGCAGAGGCAGCAGATCTGGTCGGAGTTTCGGAGGATCCGAGAGAGGGAGGAAGCGGAGTCGGAGGACTTGTTTAAGGTGATATGCGGAGTGTTGAAGAAGGACATGGCGGATGAGATGCGTGGGTGGGGAGAATGGCCGGTGGAGATGGGAGATGTCGTGTTGGACATCGAACGTCTCGTGTTTAAGGATCTTGTTGGCGAAACCATTCGAGAACTCGCTTCGTTTTCCCCTCAATCTCAATGTAACAACAAGCTACAACTACCCGCGCTTCGTAGGAAACTCGTCTTTTGA
Predicted protein sequences of Glyma02g16181
>Glyma02g16181.1   sequence type=predicted peptide   gene model=Glyma02g16181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTGIVRDQNLEKHIHKQMGCMAGFLQIFDRHQMLTGKRIYSPKRLPPASPEPENPAVSPARSTPSPAREVTSSEPQANVPTLPVLEFKEGTRSSWKFSREAPRLSLDSRAIVDAKGTLHLHPREIPPENDADKQRRSTSVIAKLMGLEPLPDSEPGPGPGPVAKLQRSASESRVPRDPPLPLTTQCRFFDPNNFFSAQFTTNVVYENNNNNNAAIESRFVNSRVAADPPKQRLKKSFYDSADFFPEPKHTVSVYGEIERRLRMRGINEPSKDLHTLKHILEALQLKGLLHSNNKPNQSPIVVMKPVRSVNRTGNDYSPRSSPRRSPRVTNEARRSEQNERNVRGQGRTLSSSPNRRKQEPQRRVGVDSRRVSPVNSPKVSPRRNANATCQHVPSGSPRMMRKNIERKEKVLLGGAEDESSTVSDNSFSTCSYPDTERYRSEEYMEGKDLLDRCDKLLNSIAEITAANELQPSPVSVLDSSFYKDEWASPSPITKRCIDYKDHAAESEDDMWSAALCSSEEAASEDCDFAYVWEILRACTYLPEESDIFLLLEKQQCLKGKDTSKASTLQRRLIFDTLQEILNRNQQLPPWKAVSCGEQRQQIWSEFRRIREREEAESEDLFKVICGVLKKDMADEMRGWGEWPVEMGDVVLDIERLVFKDLVGETIRELASFSPQSQCNNKLQLPALRRKLVF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo