Glyma02g16170 - SoyBase

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Report for Sequence Feature Glyma02g16170

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14579282
stop:	14585464
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03055	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). \| chr1:710102-711763 REVERSE LENGTH=264	SoyBase	E_val: 5.00E-83	ISS
GO:0010223	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary shoot formation	SoyBase	N/A	ISS
GO:1901601	GO-bp	Annotation by Michelle Graham. GO Biological Process: strigolactone biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C7AU21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DWARF27 n=2 Tax=Oryza sativa Japonica Group RepID=C7AU21_ORYSJ	SoyBase	E_val: 1.00E-89	ISS
UniRef100_I1JF58	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF58_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16170

Paralog	Evidence	Comments
Glyma10g03631	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g143300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g16170

Limit To All Plant Sequences

>Glyma02g16170.1   sequence type=CDS   gene model=Glyma02g16170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAAATTGGTTGCACAGTGCAATAGTCCAACACTAACTTTAGCTCACTGGAAACTAAAACAACCTTGTGTGGTTGGAGTGCTGGCAAGGCCTGCTGATGACATTTCAGGAGAAGCAAGAAAAACTAATCATGTGTACAAAGATGGCTTGTTTGATCGCATAGCCATAAACTATTTATCAAAATGCGTTCAAGAGGCAACAGGACTCAAAAATAGTAAGAGTGGTTATGAGAGCCTGGTAGAGGCAGCTACCCTGGCTTCGCAGAGATTTAGTCCTATTGAACAGCATCAACTTGTCATTCAATCCCTTGACAGAGCCTTTCCCAAGCCAATGCTTTTACTGATAAGGACACTGCTACCACCCTCTAAATTCGCAAGGAAATTGTTTGCCATCTTCACCACTTTGTTCTTTGCTTGGTTAGTCGGGCCCTCTGAGGTGAGAGAATCAGAGGTGGAGGGGAGAAGAGAAAGAAATGTAGTCCACATAAAAAAGTGCAGGTTCTTAGAAGAGACAAATTGTGTAGGAATGTGTATCAATCTTTGCAAACTCCCATCTCAATCGTTTATAAAAGATTCTCTGGGTATGTCAGTCAACATGGTTCCTAATTTTGATGACATGAGTTGTGAGATGATATTTGGCGAGGATCCCCCAGAATCAACTGATGATCCAGCACTGAATCAACCGTGTTTTAAACTATGCAAGGCAAAAAGAAGCCATGGAACCAATTGCCTCGTTATAAATTAA

Predicted protein sequences of Glyma02g16170

Limit To All Plant Sequences

>Glyma02g16170.1   sequence type=predicted peptide   gene model=Glyma02g16170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKLVAQCNSPTLTLAHWKLKQPCVVGVLARPADDISGEARKTNHVYKDGLFDRIAINYLSKCVQEATGLKNSKSGYESLVEAATLASQRFSPIEQHQLVIQSLDRAFPKPMLLLIRTLLPPSKFARKLFAIFTTLFFAWLVGPSEVRESEVEGRRERNVVHIKKCRFLEETNCVGMCINLCKLPSQSFIKDSLGMSVNMVPNFDDMSCEMIFGEDPPESTDDPALNQPCFKLCKAKRSHGTNCLVIN*

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