Report for Sequence Feature Glyma02g16130
Feature Type: gene_model
Chromosome: Gm02
Start: 14532132
stop: 14544294
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g16130
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G38840 AT
Annotation by Michelle Graham. TAIR10: Guanylate-binding family protein | chr2:16227329-16232115 FORWARD LENGTH=602
SoyBase E_val: 0 ISS
GO:0006955 GO-bp
Annotation by Michelle Graham. GO Biological Process: immune response
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0003924 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTPase activity
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
PTHR10751 Panther
GUANYLATE-BINDING PROTEIN
JGI ISS
PF02263 PFAM
Guanylate-binding protein, N-terminal domain
JGI ISS
PF02841 PFAM
Guanylate-binding protein, C-terminal domain
JGI ISS
UniRef100_B9S4R5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Interferon-induced guanylate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S4R5_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI0002336D41 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002336D41 related cluster n=1 Tax=unknown RepID=UPI0002336D41
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g16130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g16130
Paralog Evidence Comments
Glyma10g03660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g16130 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g143000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g16130
Coding sequences of Glyma02g16130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g16130.2 sequence type=CDS gene model=Glyma02g16130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTTTTTCATTTCTGATACATTCTTCCCTTCGTCATGAATATTATTATTGCTTTCACTCTGCAAGCACTTCAATTCCCTTCCTTTCAATTCCGCAGATAGACACCTCTCTCTCTCTCTCTCTCTGCATTATTATGGACTCTCCGTTTCTTCTTCCGCTTCTTCTCATCTTCCTCTTCCTCTCTCCCACTCCCTCCTCCTCCTCCATTGATAATTTCCACCAAGCCTTTCCCATCGTTGAACCTGATCCTGGTCACACAAAACTTCGTCTTTCAAGAGAAGGTTTGGAGGCTATTGAGAAAATAACCAACCCCATTGCAGCAGTGGCAGTGATTGGGCCGTATCGTTCTGGAAAATCTTTTTTGCTTAATCAACTTCTCTCTCTTTCTTGTTACGAAGGGTTTGGTGTTGGGCACATGCGTGACACCAAGACAAAAGGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGGATATTTGCTTTGGCAACTGTCTTGAGTTCTGTGCTCATATATAATTTGCCCGAGACGATACGTGAAGCTGACATCTCTCGACTCTCTTTTGCGGTTGAGCTTGCTGAAGAATTTTATGGGAGAGTGAAGGGTCAAGATGTTGCATTTGAACCTGCTAAGCTCTTATGGCTCATCCAACGTGATTTTTTGCAAGGGAAATCGGTGCAAGAAATGGTGAATGAAGCTCTTAGACATGTTCCCAATACTGATGGGAACAAAAATATTGATGTGGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAACCACATATCCAGCGGACAAAGCTTTGTGATATGAAGGATGTGGAGCTTGATCAATTGTATGTCAAGAGAAGGGAGCAATTGAAAAAGCTTGTTGCTAGCATAATCACTCCAAAAATTGTACAGGGAAAGACTCTAAACGGGAAGGAGTTTGTCTCCTTTCTGGAGCAGATACTTGAAGCCTTGAACAAAGGAGAGATTCCATCAACAGGCTCTCTTGTGGAGGTTTTCAACAAGAATATTCTTGAGAAATGTCTTAAGTTATACAGTGAAAAGATGGCGAAATTAGTTCTACCTCTTCCTGAGAAATCTCTGCAAGGGGCCCATGATAGGTCTAGAGATGAAGTCACAAAAGTCTTTGATCAGCAGCATTTTGGTCGTCACCATGCTAAGAAATCATTTATGCAGCTGGATGAAGAAATACAACAGGTGTATAAGAATGTTGTTTTGCAAAATGAGTATCAATCTTCAAGGCTCTGTGAAGCGCTGTACACCAGATGTGAGGACAAAATGGATCAGCTTCAAGTTCTCAAACTTCCTTCCTTGGCAAAATTTAATGCAGGTTTCCTGCAATGCAATCGTAGTTTTGAGCGTGAATGTGTTGGACCTTCAAAAGCAAATTATGAGCAACGCATAATGAAGATGATGGGGAAGTCTCGGTCTCTGTTTATAAAGGAGTACAATCACAGGCTCTTCAATTGGTTGGTGGCCTTCTCCCTGGTTATGGTAGTGATTGGCCGCTTTTTTATAAAATTCATTTTGGTTGAAATTGGAGCTTGGGCACTCTTTATATTTCTGGAGACATACACAAGAATGTTTTGGACAGCAGAGTCACTTTACTATAACCCAGTTTGGCATTTTATAGTTGCAACTTGGGAAACTGTTGTTTACAGCCCAATCCTGGATCTTGACAGATGGGCTATTCCCCTCGGTGTCATGGTGTCATTGTTTATTCTTTATTGGCGGTGTTATGGAAGAAGAAAACATGGATCCCTATTACCTTTATACAGAAGCAATAAGAATGGTCCTAATCGACCACGAACAGATTAA
Predicted protein sequences of Glyma02g16130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g16130.2 sequence type=predicted peptide gene model=Glyma02g16130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
FFSFLIHSSLRHEYYYCFHSASTSIPFLSIPQIDTSLSLSLCIIMDSPFLLPLLLIFLFLSPTPSSSSIDNFHQAFPIVEPDPGHTKLRLSREGLEAIEKITNPIAAVAVIGPYRSGKSFLLNQLLSLSCYEGFGVGHMRDTKTKGIWVWGTPIDLDINGVRTSVFYLDTEGFESVGKSNVYDDRIFALATVLSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLLWLIQRDFLQGKSVQEMVNEALRHVPNTDGNKNIDVVNQIRDSLAIMGDNSTAFSLPQPHIQRTKLCDMKDVELDQLYVKRREQLKKLVASIITPKIVQGKTLNGKEFVSFLEQILEALNKGEIPSTGSLVEVFNKNILEKCLKLYSEKMAKLVLPLPEKSLQGAHDRSRDEVTKVFDQQHFGRHHAKKSFMQLDEEIQQVYKNVVLQNEYQSSRLCEALYTRCEDKMDQLQVLKLPSLAKFNAGFLQCNRSFERECVGPSKANYEQRIMKMMGKSRSLFIKEYNHRLFNWLVAFSLVMVVIGRFFIKFILVEIGAWALFIFLETYTRMFWTAESLYYNPVWHFIVATWETVVYSPILDLDRWAIPLGVMVSLFILYWRCYGRRKHGSLLPLYRSNKNGPNRPRTD*