Glyma02g16090 - SoyBase

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Report for Sequence Feature Glyma02g16090

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14506755
stop:	14508518
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43700	AT	Annotation by Michelle Graham. TAIR10: AUX/IAA transcriptional regulator family protein \| chr5:17550465-17551206 FORWARD LENGTH=186	SoyBase	E_val: 6.00E-83	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006417	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translation	SoyBase	N/A	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_I1JF49	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF49_SOYBN	SoyBase	E_val: 1.00E-145	ISS
UniRef100_O24542	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 22D n=1 Tax=Vigna radiata var. radiata RepID=AX22D_VIGRR	SoyBase	E_val: 2.00E-120	ISS

Expression Patterns of Glyma02g16090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16090

Paralog	Evidence	Comments
Glyma10g03710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g142600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16090

Limit To All Plant Sequences

>Glyma02g16090.2   sequence type=transcript   gene model=Glyma02g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGAAGGTGGTCGGTTCGCGCTTCATGATTTGTGTGTAAAATTCTTGCACCCATGAGAATAAGTCACCTAGATATTGTCCCACACTATTGTTGCTATAAAACTTAACGAGCCACCCACTAGCCTTGCATCTCATTTCTCAATTCTCACATTATTATTCATATCTCTCTCTCTCTCCCCCAAGAAATTCAACAGAGTTTTGATTAACTTGAAATTGTTCAACAAGAAATGGAGAATTCATTGGGAAAGTACGGAAAAGAGCTTAATCTCGAGGCTACAGAGTTGAGGTTGGGGTTGCCTGGAAGCGATGAGCCTGAGAAACGTTCTGCTGTTAGAAGCAACAAGAGATCTTCACCAGAAGCAAGTGAAGAAGAGTGCATAAGCAAGGGCAACATGAATTCTTCTGATGGTTCTGATATCACAAGTGATGACCAAGACAACGTTGTGCCACCTGCAAAGGCACAAGTAGTGGGATGGCCACCGGTTCGATCATATAGGAAGAATAGTCTACAACAAAAGAAAGAAGAACAGGCTGAAGGGGCTGGGATGTACGTGAAAGTTAGCATGGAAGGTGCACCTTACTTGAGGAAGATAGATCTAAAGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAAAACATGTTCAAGTGCACATTTGGTAAGAACCTAGAACAAGTTTAAGATGATCTTTTTTTTTTGGCTTGTTACGATTTGGCATATATGTGTGTATGTTGAAAAGAAGAATAAAGTTGTAAATGCTTGTGATCCAGGTCAATATTCGGAAAGGGAAGGGTATAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGGGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTGTCATCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTTTGACCCAAAAACCAAAGCAGGACCATCATGCATACCCATATCCAAAACATGGAGCAAAGCAATTTACCGTGACGTCATCCATCGGAATTTCTTCTGTTTGGAACATGCAAGCTAGCTAGCTAGCTAGCACTTGGCCTCTGTGAATGGTCATATAAATTAGCTTATTGAAAAGAGAGATGCACATACACGGTTTTATTTTTCCTTTATTTGTTTATTTCAAAAGCTAGGTGACTTTTTAGACCTGCTTAAAACACTATTCCAAATTCTCAAAGCCTAAACCAGAATTGAAAACTGTAATGAAATGAGAAGAGATCGAATAAAAGCAAAGGAAAAAAAAACACTATTCTCATGTGTCTGGTTACGTACAAAATATATATACAAAGGGATCAAGAAGTAGGAACTTCAATTCTTTGTTTCTTTCTTACTTCTCTTCTTTTTCATTTGATTTGATCTAATCTATTTTTCTACTTG

Coding sequences of Glyma02g16090

Limit To All Plant Sequences

>Glyma02g16090.1   sequence type=CDS   gene model=Glyma02g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATTCATTGGGAAAGTACGGAAAAGAGCTTAATCTCGAGGCTACAGAGTTGAGGTTGGGGTTGCCTGGAAGCGATGAGCCTGAGAAACGTTCTGCTGTTAGAAGCAACAAGAGATCTTCACCAGAAGCAAGTGAAGAAGAGTGCATAAGCAAGGGCAACATGAATTCTTCTGATGGTTCTGATATCACAAGTGATGACCAAGACAACGTTGTGCCACCTGCAAAGGCACAAGTAGTGGGATGGCCACCGGTTCGATCATATAGGAAGAATAGTCTACAACAAAAGAAAGAAGAACAGGCTGAAGGGGCTGGGATGTACGTGAAAGTTAGCATGGAAGGTGCACCTTACTTGAGGAAGATAGATCTAAAGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAAAACATGTTCAAGTGCACATTTGGTCAATATTCGGAAAGGGAAGGGTATAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGGGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTGTCATCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTTTGA

>Glyma02g16090.2   sequence type=CDS   gene model=Glyma02g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATTCATTGGGAAAGTACGGAAAAGAGCTTAATCTCGAGGCTACAGAGTTGAGGTTGGGGTTGCCTGGAAGCGATGAGCCTGAGAAACGTTCTGCTGTTAGAAGCAACAAGAGATCTTCACCAGAAGCAAGTGAAGAAGAGTGCATAAGCAAGGGCAACATGAATTCTTCTGATGGTTCTGATATCACAAGTGATGACCAAGACAACGTTGTGCCACCTGCAAAGGCACAAGTAGTGGGATGGCCACCGGTTCGATCATATAGGAAGAATAGTCTACAACAAAAGAAAGAAGAACAGGCTGAAGGGGCTGGGATGTACGTGAAAGTTAGCATGGAAGGTGCACCTTACTTGAGGAAGATAGATCTAAAGGTTTACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAAAACATGTTCAAGTGCACATTTGGTAAGAACCTAGAACAAGTTTAA

Predicted protein sequences of Glyma02g16090

Limit To All Plant Sequences

>Glyma02g16090.1   sequence type=predicted peptide   gene model=Glyma02g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENSLGKYGKELNLEATELRLGLPGSDEPEKRSAVRSNKRSSPEASEEECISKGNMNSSDGSDITSDDQDNVVPPAKAQVVGWPPVRSYRKNSLQQKKEEQAEGAGMYVKVSMEGAPYLRKIDLKVYKSYPELLKALENMFKCTFGQYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGLGCF*

>Glyma02g16090.2   sequence type=predicted peptide   gene model=Glyma02g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENSLGKYGKELNLEATELRLGLPGSDEPEKRSAVRSNKRSSPEASEEECISKGNMNSSDGSDITSDDQDNVVPPAKAQVVGWPPVRSYRKNSLQQKKEEQAEGAGMYVKVSMEGAPYLRKIDLKVYKSYPELLKALENMFKCTFGKNLEQV*

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