SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54650 | AT | Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein | chr3:20226004-20228882 REVERSE LENGTH=593 | SoyBase | E_val: 0 | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0031146 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0055047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: generative cell mitosis | SoyBase | N/A | ISS |
| GO:0001673 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: male germ cell nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0019005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1947 | KOG | Leucine rich repeat proteins, some proteins contain F-box | JGI | ISS | |
| PTHR23125 | Panther | F-BOX/LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR23125:SF123 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00646 | PFAM | F-box domain | JGI | ISS | |
| UniRef100_B9S4S5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box/leucine rich repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S4S5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JF47 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF47_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g16060 not represented in the dataset |
Glyma02g16060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g03730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g142300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g16060.1 sequence type=CDS gene model=Glyma02g16060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCGTCCTCCCATCCCCGCCGCTCTCCCACCCGCTCACGGAGGAGATGCCGCTGATGCCGCCAAGCACGGCAAGAAGCGCGGCAGTTACAACTGCGGCCGCTGCGGCCTCCCGAAGAAGGGCCACAACTGCACCGTCAAAACCCTCGCCTCCACCGCCGATGCAACTCCCGATTCGTCTCTCTCCGTTGTCTCCGTCCCTTCCGCGGCCGCGCCCAGTCTCCGAAAGCCTTCGTCGAATCTCCGTCGCGCGCTGTCGTTCGACGATCTTGATGAACGTCTTCCCGTTGTCGATCGGTCCGAACCAGATGAAGAAGTGGATTCGGATGTGTTCGATGAGACCGATCCGGATCTGGATCTGGACGCCGATGCGTGCGGGCTGCCGGCTAGGCTCCTGTGGGAAGTGATGAGGAGGCTGCCGCCGCCGGGGCTGTTGTCCGCCGCGAAGGTTTGTAAGGGATGGAGGGATACGGCGAAGAGGATGTGGAGAGCGGCCGAGGAATTGAAAATTAGGGTTCCGGCTAATGTTCCTGTCGGATTTGTTGCCTCGATGTTGCAAAAGTGTCCTGGGATTGTGAGACTCTCGCTTAGAATGGAGAGTGATTTTGATTCAACTATGTTGGCTTGCATTGCCTTCTCGTGCCCTAATCTCGAGTGTATGGAGATCTTGACGTTTGATACTGCAACCATTCGGATCAATGGAGATGAATTAGGCCGATTTGTTGCTGATAAAAAAAGCCTCAAAAGCCTCAAGATGGAAGGTTGTTCTAACCTGGGTGGTTTTGTCCTGTGTTCGTCTAGTCTTTCTACACTCTGGCTATCAGATCTGCACTCTCTCTCTAAGATGGTATTTAATTGTCCCCAGTTGAGAGAGGTTTCCTTGGAGTTTTCTTGCCAAGAGAATGATAGTACGGATCTCAAAACTATGATTGAAGGTTTGGGAAGAAGTTGTCTGAGATTGCAAAACATACATATAGCTTCAATATGGCTTTCACACTCTGCCGTGCTTGCTCTTACAGCTGCTCAGTTGAGGGGGCTGCGAATGCTTTCTCTCGTTCTTGGATCCGAAATCACTGATGCATCTGTTGCTGCCATTGCCTCAAGCTATCCAAATCTTGAATTGCTTGATCTCAGTGGATCTGGCATTAGTGACAGTGGCATTAGTATGATTTGCAATGTGTTCCCTGATACATTGACAAGACTCCTTCTTGCTCTTTGCCCTAATGTGACTTCAAGTGGTATTCAATTTGCTACGTTTCAGTTGCCACACCTTGAAATTATGGACTGTGGCATGACCATATGTGATCCTAATATGCAAAATCCAACTGCGGATGAAAACAACTGCAAATTGCAGAAAACATCTGCCTCTAATGTACACTTTACAAACCAAAAGCTAATCATCAAGCATAGCCGTTTAAAGAAACTCAGTTTATGGGGTTGCACTGGCTTAGATGCCCTATACTTGAACTGCCCACGACTCATTGATCTGAATCTAAATTCTTGTTCAAATTTGCATCCTGGGAGACTGTTGCTCCAGTGCCCCAATTTGGAAAATGTTCATGCATCAGGTTGTCAGGATATGTTAATAGGGGCCATCCAAAGTCAGGTCCATGATGCTTCTGCTGATATGGAAAACCATTCACCTTCTAAACGTCTACCTGATGGTTCCAAAAGGATCCGGGTTCCACATTTACTCAGTGAAGAGTCCCCTGAACCTGAAAAAAAACGAAGGAGGATCGAGAGACAGCTTTGTAATGTACTTCTGGACTGA
>Glyma02g16060.1 sequence type=predicted peptide gene model=Glyma02g16060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRPPIPAALPPAHGGDAADAAKHGKKRGSYNCGRCGLPKKGHNCTVKTLASTADATPDSSLSVVSVPSAAAPSLRKPSSNLRRALSFDDLDERLPVVDRSEPDEEVDSDVFDETDPDLDLDADACGLPARLLWEVMRRLPPPGLLSAAKVCKGWRDTAKRMWRAAEELKIRVPANVPVGFVASMLQKCPGIVRLSLRMESDFDSTMLACIAFSCPNLECMEILTFDTATIRINGDELGRFVADKKSLKSLKMEGCSNLGGFVLCSSSLSTLWLSDLHSLSKMVFNCPQLREVSLEFSCQENDSTDLKTMIEGLGRSCLRLQNIHIASIWLSHSAVLALTAAQLRGLRMLSLVLGSEITDASVAAIASSYPNLELLDLSGSGISDSGISMICNVFPDTLTRLLLALCPNVTSSGIQFATFQLPHLEIMDCGMTICDPNMQNPTADENNCKLQKTSASNVHFTNQKLIIKHSRLKKLSLWGCTGLDALYLNCPRLIDLNLNSCSNLHPGRLLLQCPNLENVHASGCQDMLIGAIQSQVHDASADMENHSPSKRLPDGSKRIRVPHLLSEESPEPEKKRRRIERQLCNVLLD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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