Glyma02g16010 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g16010

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14441614
stop:	14447278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g16010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54660	AT	Annotation by Michelle Graham. TAIR10: glutathione reductase \| chr3:20230356-20233100 REVERSE LENGTH=565	SoyBase	E_val: 0	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0006749	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutathione metabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004362	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione-disulfide reductase activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016668	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
KOG0405	KOG	Pyridine nucleotide-disulphide oxidoreductase	JGI		ISS
PTHR22912	Panther	DISULFIDE OXIDOREDUCTASE	JGI		ISS
PTHR22912:SF27	Panther	GLUTATHIONE REDUCTASE	JGI		ISS
PF00070	PFAM	Pyridine nucleotide-disulphide oxidoreductase	JGI		ISS
PF02852	PFAM	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	JGI		ISS
PF07992	PFAM	Pyridine nucleotide-disulphide oxidoreductase	JGI		ISS
UniRef100_I1JF43	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF43_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P48640	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione reductase, chloroplastic n=1 Tax=Glycine max RepID=GSHRP_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g16010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g16010

Paralog	Evidence	Comments
Glyma10g03740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g16010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g141800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g16010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g16010

Limit To All Plant Sequences

>Glyma02g16010.4   sequence type=transcript   gene model=Glyma02g16010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGAAGAATTTGCATAGAGCAAGCAAAGCGGGGGAGAAAGAGAGGCAGCAAACAAAAACAATGGCGACGTCGCTCTCTGTTTCGCCATCTCTCTCTCTCAACACTCTCTTCATCGCCAAAGCGCTTCCACTATCTCGCCCCTCCTTTCTCTCTCTCCCTCTCCCCAAATCCCTACTCTCTCTCTCCACGCGCCGCCGCACCTTCATCGTCCGCGCCGAATCCCAAAACGGCGCCGACCCCGTTCCCGCCCACTACGACTTCGACCTCTTCACCATCGGCGCAGGCAGCGGCGGGGTCCGAGCCGCTCGCTTCGCCGCCAACTACGGCGCTTCTGTCGCCATCTGCGAGCTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAACCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAATTTTCTCATGAATTTGAAGAAAGTAATGGTTTCGGATGGAGATATGACAGTGAGCCCAAGCATGATTGGAGTAGTTTCATAGCTAATAAAAATGCTGAGTTGCAGCGTCTTACTGGCATCTACAAGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAACACATTTTAGTTGCAGTTGGAGGTCGCCCCTTCATTCCTGATATCCCTGGGAAGGAATATGCAATAGATTCAGATGCTGCCCTTGATTTACCAACAAAACCTGTGAAAATAGCCATTGTTGGTGGTGGTTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGTGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATACCGAGGAGTCTCCTCAAGCTATCACGAAGTCAGCGGATGGCTCATTCTCTTTAAAGACCAACAAAGGTACAGTGGACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGAGCATTAGTAAAAACGCTGTTTCAGGATAACCCAACAAAACCTGATTATAGAGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCGCTGAAAGCTACTCTCTCTGGGCTTCCAGACCGGGTTTTTATGAAATTAGTAGTCTGTGCAAAAACAAATGAAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCAGCTGAGGAATTTGTTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAACAATATGACTCTGCTTCAATTGTTATACTTGAAGAAACCAGCCGGTGCCTCAAGGTTGTCACTAAATTTATCGTGGTTGTCAAATTATAGGGAAGAAATTCAGAACGATCTTCAGCTACTGAGTTTTCAGAGCAATACATGGAATATCTCATTAAGGTCGTGTGTCATACTTCTCTGGTCTTGCAATGTAATTATGACAGTTGGGAGCCTGGAAGGTCGAGTGAAATTCGTGCCAATTTTTGCCATTTGTAATTTAACTTATTTTCCCATGCATGTACAAAAAATAAGAGGAAATTCCGTGTGGGAATTTGATTTTTACATAATCTCTGCATCGAATTTGAACTAGTTGGAATTGAGACCAACGGCAATGGTCAGCATGAAAAATATTTTTCTTTTCTAATATATATAACGTTGTTCATCTCTGTATCTGCAATTTCCAGCTGCAAAATTTATCCATCCTTGCTGGTGCACAGAATGATAGGATAGGGCTCAAGTATGCCTAAAAG

Coding sequences of Glyma02g16010

Limit To All Plant Sequences

>Glyma02g16010.3   sequence type=CDS   gene model=Glyma02g16010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGTCGCTCTCTGTTTCGCCATCTCTCTCTCTCAACACTCTCTTCATCGCCAAAGCGCTTCCACTATCTCGCCCCTCCTTTCTCTCTCTCCCTCTCCCCAAATCCCTACTCTCTCTCTCCACGCGCCGCCGCACCTTCATCGTCCGCGCCGAATCCCAAAACGGCGCCGACCCCGTTCCCGCCCACTACGACTTCGACCTCTTCACCATCGGCGCAGGCAGCGGCGGGGTCCGAGCCGCTCGCTTCGCCGCCAACTACGGCGCTTCTGTCGCCATCTGCGAGCTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAACCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAATTTTCTCATGAATTTGAAGAAAGTAATGGTTTCGGATGGAGATATGACAGTGAGCCCAAGCATGATTGGAGTAGTTTCATAGCTAATAAAAATGCTGAGTTGCAGCGTCTTACTGGCATCTACAAGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAACACATTTTAGTTGCAGTTGGAGGTCGCCCCTTCATTCCTGATATCCCTGGGAAGGAATATGCAATAGATTCAGATGCTGCCCTTGATTTACCAACAAAACCTGTGAAAATAGCCATTGTTGGTGGTGGTTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGTGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATACCGAGGAGTCTCCTCAAGCTATCACGAAGTCAGCGGATGGCTCATTCTCTTTAAAGACCAACAAAGGTACAGTGGACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGAGCATTAGTAAAAACGCTGTTTCAGGATAACCCAACAAAACCTGATTATAGAGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCGCTGAAAGCTACTCTCTCTGGGCTTCCAGACCGGGTTTTTATGAAATTAGTAGTCTGTGCAAAAACAAATGAAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCAGCTGAGGAATTTGTTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAA

>Glyma02g16010.4   sequence type=CDS   gene model=Glyma02g16010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGTCGCTCTCTGTTTCGCCATCTCTCTCTCTCAACACTCTCTTCATCGCCAAAGCGCTTCCACTATCTCGCCCCTCCTTTCTCTCTCTCCCTCTCCCCAAATCCCTACTCTCTCTCTCCACGCGCCGCCGCACCTTCATCGTCCGCGCCGAATCCCAAAACGGCGCCGACCCCGTTCCCGCCCACTACGACTTCGACCTCTTCACCATCGGCGCAGGCAGCGGCGGGGTCCGAGCCGCTCGCTTCGCCGCCAACTACGGCGCTTCTGTCGCCATCTGCGAGCTTCCTTTCTCCACTATCTCCTCCGAAACCACCGGAGGTGTCGGCGGAACCTGTGTAATACGAGGATGTGTGCCGAAGAAGTTGCTGGTTTATGCATCTAAATTTTCTCATGAATTTGAAGAAAGTAATGGTTTCGGATGGAGATATGACAGTGAGCCCAAGCATGATTGGAGTAGTTTCATAGCTAATAAAAATGCTGAGTTGCAGCGTCTTACTGGCATCTACAAGAATATTTTGAACAATGCTGGGGTCAAGCTGATTGAAGGCCATGGAAAGATTATAGATCCTCACACGGTTGATGTTAATGGGAAGCTATATTCAGCCAAACACATTTTAGTTGCAGTTGGAGGTCGCCCCTTCATTCCTGATATCCCTGGGAAGGAATATGCAATAGATTCAGATGCTGCCCTTGATTTACCAACAAAACCTGTGAAAATAGCCATTGTTGGTGGTGGTTACATTGCCTTGGAGTTTGCTGGTATCTTTAATGGTTTGAAAAGTGAGGTTCATGTATTTATACGGCAAAAGAAGGTTTTGCGGGGATTTGATGAAGAGATTAGAGATTTTGTTGAAGAACAAATGTCTGTAAGAGGTATTGAATTCCATACCGAGGAGTCTCCTCAAGCTATCACGAAGTCAGCGGATGGCTCATTCTCTTTAAAGACCAACAAAGGTACAGTGGACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGATGTTACAAACAGGATAAATCTCACCCCAGTTGCTTTGATGGAGGGAGGAGCATTAGTAAAAACGCTGTTTCAGGATAACCCAACAAAACCTGATTATAGAGCTGTTCCTTCTGCTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCGCTGAAAGCTACTCTCTCTGGGCTTCCAGACCGGGTTTTTATGAAATTAGTAGTCTGTGCAAAAACAAATGAAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCACTGTAGGCATTCACCCAAGTGCAGCTGAGGAATTTGTTACCATGAGGACACCTACTAGGAAGATACGAAAGAGTGAATCGTCTGAGGGTAAGTCGGGCTCTCAAGCAAAAGCTGCAGCAGGGGTTTAA

Predicted protein sequences of Glyma02g16010

Limit To All Plant Sequences

>Glyma02g16010.3   sequence type=predicted peptide   gene model=Glyma02g16010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSLSVSPSLSLNTLFIAKALPLSRPSFLSLPLPKSLLSLSTRRRTFIVRAESQNGADPVPAHYDFDLFTIGAGSGGVRAARFAANYGASVAICELPFSTISSETTGGVGGTCVIRGCVPKKLLVYASKFSHEFEESNGFGWRYDSEPKHDWSSFIANKNAELQRLTGIYKNILNNAGVKLIEGHGKIIDPHTVDVNGKLYSAKHILVAVGGRPFIPDIPGKEYAIDSDAALDLPTKPVKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVEEQMSVRGIEFHTEESPQAITKSADGSFSLKTNKGTVDGFSHIMFATGRRPNTQNLGLESVGVKLAKDGAIEVDEYSQTSVSSIWAVGDVTNRINLTPVALMEGGALVKTLFQDNPTKPDYRAVPSAVFSQPPIGQVGLTEEQAVQQYGDIDIFTANFRPLKATLSGLPDRVFMKLVVCAKTNEVLGLHMCGEDAPEIVQGFAVALKARLTKADFDATVGIHPSAAEEFVTMRTPTRKIRKSESSEGKSGSQAKAAAGV*

>Glyma02g16010.4   sequence type=predicted peptide   gene model=Glyma02g16010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSLSVSPSLSLNTLFIAKALPLSRPSFLSLPLPKSLLSLSTRRRTFIVRAESQNGADPVPAHYDFDLFTIGAGSGGVRAARFAANYGASVAICELPFSTISSETTGGVGGTCVIRGCVPKKLLVYASKFSHEFEESNGFGWRYDSEPKHDWSSFIANKNAELQRLTGIYKNILNNAGVKLIEGHGKIIDPHTVDVNGKLYSAKHILVAVGGRPFIPDIPGKEYAIDSDAALDLPTKPVKIAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEIRDFVEEQMSVRGIEFHTEESPQAITKSADGSFSLKTNKGTVDGFSHIMFATGRRPNTQNLGLESVGVKLAKDGAIEVDEYSQTSVSSIWAVGDVTNRINLTPVALMEGGALVKTLFQDNPTKPDYRAVPSAVFSQPPIGQVGLTEEQAVQQYGDIDIFTANFRPLKATLSGLPDRVFMKLVVCAKTNEVLGLHMCGEDAPEIVQGFAVALKARLTKADFDATVGIHPSAAEEFVTMRTPTRKIRKSESSEGKSGSQAKAAAGV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain