Glyma02g15990 - SoyBase

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Report for Sequence Feature Glyma02g15990

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14432295
stop:	14437832
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g15990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06780	AT	Annotation by Michelle Graham. TAIR10: galacturonosyltransferase 6 \| chr1:2083689-2086853 FORWARD LENGTH=589	SoyBase	E_val: 0	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0047262	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity	SoyBase	N/A	ISS
PTHR13778	Panther	GLYCOSYL TRANSFERASE-RELATED	JGI		ISS
PTHR13778:SF6	Panther		JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_B9H8H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase, CAZy family GT8 n=1 Tax=Populus trichocarpa RepID=B9H8H7_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336C3D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336C3D related cluster n=1 Tax=unknown RepID=UPI0002336C3D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g15990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15990

Paralog	Evidence	Comments
Glyma10g03770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g141600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g15990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g15990

Limit To All Plant Sequences

>Glyma02g15990.1   sequence type=CDS   gene model=Glyma02g15990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAACATCCGTCGCTGCCAGAGGATTCTCATCCTCTCTCTCTTCTTTCTCTCCGTCGTCGCTCCTCTCGTCTTCGTCTCTCACCGGCTCAACCTTCTCACTCTTCTCGGGAGAGGAGAGTTTCTCGAAGATTTGTATCGCGCTACATACAGGGGAGATACTTTGAAGTTAAATGCTGTAGAACAGGAAGGTGCTGAAGGATTAGAAGAGCCAAATCAAGTTGTTTATACGGAAAAAGATTTTTCTTCGACAATTAGTTACTTTTCAGAAAAGAATAATGATTTTAAGGAATCTAGAATTGCCGGTTACAGAACTACCACTTTGGAAAGAAATGGATTCAATCCCGATAAAAGACAACACCAGGGAGCTCAGCAGAATGAATTATCCTTCATGGCTCAAGGTAGGAACATACATGATTCACAGAGAATGTCAGAGAAGAATATTGAAGTTACAAATAAGAAAGTTCAGGAGATTAAGGATCAAATTATTTTAGCAAAAGCATACTTGAAAATTGCACCACCAAGCAGCAATTTACGCTTGAGGGATTTGGAGCAGCTAACGAGAGAGATGGAATTAGCAGTTGGAGAAGCTGCCCGGGATTCAGATCTGTCAATGAGTGCTTTGCAGAAAAGGAGACACATGGAGGCTTCACTGTCTAAAGTCTATCGTGCTTTCCCAGACTGCTCTGCCATGGGTGCTAAGCTCCATATGATGCAGCGTCAGGCTGAAGAGCAAGTCCGTTCTCAGAGACATCAAGCAACATATCTTGTTCATATTGCTGCGAGGACCGCCCCAAAAGGCCTTCACTGTCTTTCTATGCGGTTGACTGCAGAATACTTTTCCTTGAGGCCTGAGGAGAGAAAACTTCCAAATGAAAATAAAATTCATCATCCTGACCTTTATCATTATGCTGTCTTCTCTGACAATGTTCTGGCATGTGCAGCGGTTGTTAATTCTACTATCTCTACTGCCAAGGAACAGGAGAAACTTGTTTTCCATGTATTGACCAAATCACTCAACTTACCATCAATCTCAATGTGGTTCTTAATAAACCCTCCTGGCAAAGCTACAGTCCATATACTGAGCATAGACAACTTTGAATGGTCGTCCAAGTACAATACCTACCAGGAAAATAATTCCAGTGATCCAAGATACACTTCTGAACTGAACTACCTGCGTTTCTACCTTCCAGACATTTTTCCTGCTTTAAATAAGATTGTGCTTTTTGATCATGATGTGGTGGTGCAGAGAGATCTCAGTGAACTATGGAATATCAATATGAAGGGAAAAGTAATTGGAGCCATTGGAACTTGTCAGGAAGGAAAAATCCCATTTCATAGGATTGATATGTTCATAAACTTGTCAGATCCATTAATTGGAAAGAGGTTTGATGTCAATGCTTGCACATGGGCATTTGGGATGAATTTGTTTGATTTGCAACAGTGGAGGAGACATAATTTAACTGTTGTCTATCAGAATTATTTGCAAATGGGTTTGTGGAACATTGGAAGTCTACCTTTAGGCTGGCTGACTTTCTATAACAAGACAGAGTTGTTGGATAGACAGTGGCATGTTCTTGGCCTTGGTTATAGTTCGAATGTCGATCGAAATGAGATTGAGCAGGCTGCCGTTATACACTATGATGGGCTTAGGAAGCCGTGGCTGGATATTGCAATGGGCAGATATAAAAGTTATTGGACCAAATTTTTGAATTTTGACAACATTTTTTTGCAACAGTGCAATCTCCAGGCATAG

Predicted protein sequences of Glyma02g15990

Limit To All Plant Sequences

>Glyma02g15990.1   sequence type=predicted peptide   gene model=Glyma02g15990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNIRRCQRILILSLFFLSVVAPLVFVSHRLNLLTLLGRGEFLEDLYRATYRGDTLKLNAVEQEGAEGLEEPNQVVYTEKDFSSTISYFSEKNNDFKESRIAGYRTTTLERNGFNPDKRQHQGAQQNELSFMAQGRNIHDSQRMSEKNIEVTNKKVQEIKDQIILAKAYLKIAPPSSNLRLRDLEQLTREMELAVGEAARDSDLSMSALQKRRHMEASLSKVYRAFPDCSAMGAKLHMMQRQAEEQVRSQRHQATYLVHIAARTAPKGLHCLSMRLTAEYFSLRPEERKLPNENKIHHPDLYHYAVFSDNVLACAAVVNSTISTAKEQEKLVFHVLTKSLNLPSISMWFLINPPGKATVHILSIDNFEWSSKYNTYQENNSSDPRYTSELNYLRFYLPDIFPALNKIVLFDHDVVVQRDLSELWNINMKGKVIGAIGTCQEGKIPFHRIDMFINLSDPLIGKRFDVNACTWAFGMNLFDLQQWRRHNLTVVYQNYLQMGLWNIGSLPLGWLTFYNKTELLDRQWHVLGLGYSSNVDRNEIEQAAVIHYDGLRKPWLDIAMGRYKSYWTKFLNFDNIFLQQCNLQA*

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