Glyma02g15980 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g15980

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14421269
stop:	14427227
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g15980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30580	AT	Annotation by Michelle Graham. TAIR10: DREB2A-interacting protein 2 \| chr2:13026444-13030363 FORWARD LENGTH=420	SoyBase	E_val: 3.00E-140	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0051865	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2660	KOG	Locus-specific chromosome binding proteins	JGI		ISS
PTHR10825	Panther	RING FINGER PROTEIN	JGI		ISS
PTHR10825:SF3	Panther	RING FINGER PROTEIN	JGI		ISS
UniRef100_B9S4T4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9S4T4_RICCO	SoyBase	E_val: 1.00E-137	ISS
UniRef100_I1JF39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF39_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g15980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15980

Paralog	Evidence	Comments
Glyma10g03780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g141500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g15980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g15980

Limit To All Plant Sequences

>Glyma02g15980.1   sequence type=CDS   gene model=Glyma02g15980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGACGATGAAGAGGTTGGTGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAAAAAGTTCCTCAAAGAAGCCACTGCTATTTCCCTTTGCCTGCATACGTTTTGCAGGAAGTGCATTTATGACAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTTGAGAAAATGAGGCCAGATAACATTTTGCAAGATTTAAGGAACAAGATTTTCCCTTTCAAAAAAAGAAAGGAGAAGGCACCTGTATCTGTCTCTTCAGTACTATTACCAGCTAGAAGAAAGGAGAGATCACTGTCGTCTTTGGTTGTCAGCACTCCAAGGGTATGTACACAGTCAACCATGACAGGAAGAAGAACAAAACCTGCAAGAAAGGCTAGTGGCCTGCAGGGATCTAGTTTATCCATTGAGAAGTTCATTAAAAAAGAAGAGGAATTACTGGAAGATCACCAAGATAATTTGTGCTCACCTGACACTTCAAACAAGTCTGCTAAGAATGGTGGGCAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGAACCACAGAATGGCGCTGAACCACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTTAAGTCTAATGTGCAAGCGTCTGATGCTAAACTAGAATCTATGAAAATGACTGATAGTGATGCTAAAGTGCTGAAAGCCAAAATTAAGGAAAAGAAGCGCAAGGCAAAAGTTGAAGAAGAAAAGATTAGCACTGATCATGCCTCTTCAGATACATCAAAACCCAACAAATTGCGAAGAGTTCGCCAAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTACCGACAGAAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCACAAATTCCTTCAAATTATGTAAGAATAAAGAACGGAAGCATACCTGTTTCCTTTATCCAAAAATTATTAATGAAGAAACTAGGCCTGAAAAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGCTTCCTTCACTGCAGGTGCAAAATTTGGTTGACCTGTGGGGGGTTGATACAGCGTCTTTGGGACATAGAATTTCAGCAACCATTGGATCCTCAGGGAAAGATTTTGTCATGATCCTAACCTATGGTCGGAAGGTCCTGCACCCTTGA

Predicted protein sequences of Glyma02g15980

Limit To All Plant Sequences

>Glyma02g15980.1   sequence type=predicted peptide   gene model=Glyma02g15980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMTMKRLVRVKRDAIAACMTCPLCKKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNILQDLRNKIFPFKKRKEKAPVSVSSVLLPARRKERSLSSLVVSTPRVCTQSTMTGRRTKPARKASGLQGSSLSIEKFIKKEEELLEDHQDNLCSPDTSNKSAKNGGQSLSPCKNSQSICNREPQNGAEPQEAKWDLWKTLNYLAEAASRSKPFKSNVQASDAKLESMKMTDSDAKVLKAKIKEKKRKAKVEEEKISTDHASSDTSKPNKLRRVRQKKEPVFGESRISPQAVLDATDRNLLWNDSIWFSLAASENQEGDAPLPQIPSNYVRIKNGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVDLWGVDTASLGHRISATIGSSGKDFVMILTYGRKVLHP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain