SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08230 | AT | Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein | chr1:2583715-2586700 REVERSE LENGTH=451 | SoyBase | E_val: 1.00E-72 | ISS |
| GO:0015812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamma-aminobutyric acid transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0015185 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: gamma-aminobutyric acid transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1303 | KOG | Amino acid transporters | JGI | ISS | |
| PTHR22950 | Panther | AMINO ACID TRANSPORTER | JGI | ISS | |
| PF01490 | PFAM | Transmembrane amino acid transporter protein | JGI | ISS | |
| UniRef100_B9H8I0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Proline transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H8I0_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336C3C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336C3C related cluster n=1 Tax=unknown RepID=UPI0002336C3C | SoyBase | E_val: 0 | ISS |
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Glyma02g15955 not represented in the dataset |
Glyma02g15955 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g03800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g141300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g15955.1 sequence type=CDS gene model=Glyma02g15955 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGTGGGTAGAGAAGAAACAGAGGAAAGTGGTAAAGGAACATGGAAGCACGCTGCTTTTCATGTTGCCACCACTATTGCCACCCCTGCTGCTTATGCCCCTTTGCCCTTCGCTCTTGCTTCTCTCGGTTGGCCTCTTGGTGTGACTAGTCTGGTGAGTGCAACACTAGCCACCTGGTACTCTAGCTTTTTGATCGCTTCTTTGTGGAAATGGAATGGGGAAAAGTACCTTACCTATAGACATCTTGCACATAGTATTTTCGGATTTTGGGGGTACTGGTCTATTGCCTTTTTTCAACAGGTAGCTTCTCTGGGAAATAACATTGCCATCCAAATTGCAGCTGGAAGCAGCCTTAAGGCAGTTTACAAGCACTATCACGAGAATGGAGCATTGACCCTGCAGCATTTCATTATTTTCTTTGGAATCTTTGAACTACTTCTCTCCCAGTTCCCAGATATTCACTCACTGAGATGGGTAAATGCATTGTGTACTTTCAGCACAATTGGCTTTGCTGGTACAACCATTGGTGTTACCATTTACAATGGGAAGAAAATTGATAGGACATCAGTAAGATATAGCTTGCAGGGTAGTTCTGCTTCTAAGTCCTTCAATGCCCTTGGGACCATTGCTTTTTCATTTGGTGATGCAATGCTTCCAGAAATACAGAACCTGCAAAGAGGAATATGTACAAAATATACCGTCATTGTTTTGACTTACTGGCAAGTGGCCTTCTCTGGATACTGGGCTTTCGGATCAGAAGTCCAACCTTATATTTTAGCTTCATTGTCTATCCCAGAATGGACTGTGGTTATGGCAAATTTATTTGCAGCGATTCAAATATCTGGATGCTTTCAGATATACTGCAGGCCAACATATGCCTGTTTTGAGGAAACAAGGGGTTCCAAGTCCAACAAATCAACTAGCCATTTTCCTTTTCCCCTCAGAAATCGCCCGGCACAACTTATTTTTACTTCCATCTTCATGGTTCTTGTTACTCTTATTGCTGCAGCTATGCCCTTTTTTGGAGATTTTGTGTCTATCTGTGGGGCAATTGGGTTCACTCCTTTGGACTTTGTGTTCCCCGTTTTAGCATACCTTAAGGCAGGAAGAACGGCCAATAACTCCAAACTTGGCCTTTTGATGCGACCATTAAATATTTTAATAGCTACCTGGTTTTCAATCGTTGCTATCTTGGGTTGCATTGGTGCAGTCAGATTCATAATGGCAGATATCAAGAACTACAATTTCTTCCATGATATGTAA
>Glyma02g15955.1 sequence type=predicted peptide gene model=Glyma02g15955 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVGREETEESGKGTWKHAAFHVATTIATPAAYAPLPFALASLGWPLGVTSLVSATLATWYSSFLIASLWKWNGEKYLTYRHLAHSIFGFWGYWSIAFFQQVASLGNNIAIQIAAGSSLKAVYKHYHENGALTLQHFIIFFGIFELLLSQFPDIHSLRWVNALCTFSTIGFAGTTIGVTIYNGKKIDRTSVRYSLQGSSASKSFNALGTIAFSFGDAMLPEIQNLQRGICTKYTVIVLTYWQVAFSGYWAFGSEVQPYILASLSIPEWTVVMANLFAAIQISGCFQIYCRPTYACFEETRGSKSNKSTSHFPFPLRNRPAQLIFTSIFMVLVTLIAAAMPFFGDFVSICGAIGFTPLDFVFPVLAYLKAGRTANNSKLGLLMRPLNILIATWFSIVAILGCIGAVRFIMADIKNYNFFHDM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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