SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49100 | AT | Annotation by Michelle Graham. TAIR10: Signal recognition particle, SRP9/SRP14 subunit | chr3:18196944-18198298 FORWARD LENGTH=103 | SoyBase | E_val: 8.00E-29 | ISS |
| GO:0006614 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0045900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of translational elongation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0048500 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle | SoyBase | N/A | ISS |
| GO:0005047 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal recognition particle binding | SoyBase | N/A | ISS |
| GO:0008312 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 7S RNA binding | SoyBase | N/A | ISS |
| PTHR12834 | Panther | SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN | JGI | ISS | |
| PTHR12834:SF1 | Panther | SIGNAL RECOGNITION PARTICLE 9 KD PROTEIN | JGI | ISS | |
| UniRef100_I1JF35 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JF35_SOYBN | SoyBase | E_val: 5.00E-33 | ISS |
| UniRef100_I1L8A7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle 9 kDa protein n=1 Tax=Glycine max RepID=I1L8A7_SOYBN | SoyBase | E_val: 1.00E-31 | ISS |
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Glyma02g15930 not represented in the dataset |
Glyma02g15930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g03810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g141100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g15930.1 sequence type=CDS gene model=Glyma02g15930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTCTGAAGTATAAGACAGACCAAGCACAAGAAGCCAAGAAGATGGAAAAACTCAATAATATATTCTTTACTTTGATGGCTCGGGGACCAGAAGTGGATCCATCAGAAGTCACTGGGAAAGAACCAATGGATACACAAACGACCAAGAGAGGAAGGGGAAGGAAGCAATAA
>Glyma02g15930.1 sequence type=predicted peptide gene model=Glyma02g15930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CLKYKTDQAQEAKKMEKLNNIFFTLMARGPEVDPSEVTGKEPMDTQTTKRGRGRKQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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