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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma02g15731

Feature Type:gene_model
Chromosome:Gm02
Start:14192518
stop:14194480
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g15731
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22970AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF506) | chr3:8152923-8153881 FORWARD LENGTH=259 SoyBaseE_val: 1.00E-11ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04720PFAM Protein of unknown function (DUF506) JGI ISS
UniRef100_UPI000233D69DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D69D related cluster n=1 Tax=unknown RepID=UPI000233D69D SoyBaseE_val: 5.00E-17ISS

Expression Patterns of Glyma02g15731
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g15731 not represented in the dataset
Glyma02g15731 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g15731 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g139100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g15731
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g15731
>Glyma02g15731.1   sequence type=CDS   gene model=Glyma02g15731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGATGTTGAGCTACAATTTCTGCAAGTTCGTTGAGAAGAATAAAATTTACAAGCATAAAGACAAATTCTGCAGAAAGATCATCTCAGACGGATTGTTAACCCTCAGATACGATGCTTCAATTTGCAAATCTTGCTGGGAAAAATCTCCCCTATATCCTGTTGGTATTGTAATTTATCTATTTCACTTTCTTCTCGTAGTTATGAATTTGAATTAG
Predicted protein sequences of Glyma02g15731
>Glyma02g15731.1   sequence type=predicted peptide   gene model=Glyma02g15731   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVMLSYNFCKFVEKNKIYKHKDKFCRKIISDGLLTLRYDASICKSCWEKSPLYPVGIVIYLFHFLLVVMNLN*






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