SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43750 | AT | Annotation by Michelle Graham. TAIR10: O-acetylserine (thiol) lyase B | chr2:18129604-18132322 REVERSE LENGTH=392 | SoyBase | E_val: 0 | ISS |
| GO:0000096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006535 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process from serine | SoyBase | N/A | ISS |
| GO:0006546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycine catabolic process | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process | SoyBase | N/A | ISS |
| GO:0006766 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process | SoyBase | N/A | ISS |
| GO:0009108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process | SoyBase | N/A | ISS |
| GO:0009117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019748 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary metabolic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0044272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004124 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteine synthase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG1252 | KOG | Cystathionine beta-synthase and related enzymes | JGI | ISS | |
| PTHR10314 | Panther | PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY | JGI | ISS | |
| PTHR10314:SF8 | Panther | THREONINE DEHYDRATASE | JGI | ISS | |
| PF00291 | PFAM | Pyridoxal-phosphate dependent enzyme | JGI | ISS | |
| UniRef100_A5YT88 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cysteine synthase n=1 Tax=Glycine max RepID=A5YT88_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001B63990 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B63990 related cluster n=1 Tax=unknown RepID=UPI0001B63990 | SoyBase | E_val: 0 | ISS |
|
Glyma02g15640 not represented in the dataset |
Glyma02g15640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g32790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g138400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g15640.1 sequence type=CDS gene model=Glyma02g15640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCTGCTTCCTTAATCAACTCGTTGACTTGCTCTTCGCCTGCACCCACTCAGCACTGTTTCGCCTTCACCCGCACCACCGCCACCGCTACCGCCACGTCACTGAGACAATTCAACAGCCACCGTCCGCCCCCACTCACCACGAGGATCTCCTCGTCGCCTTCCACCGTTGTCTGCAAAGCTGTCTCCGTTAAGCCCCAAACCGAAACCGAAGGTCTCAACATTGCTGACGATGTCACACAGCTCATAGGGAAAACGCCGATGGTTTACCTCAACAATATCGTGAAGGGTTCTGTGGCCAATATTGCTGCGAAGCTTGAGATTATGGAGCCCTGTTGTAGTGTCAAGGACAGGATTGGTTTTAGTATGATAAATGATGCTGAGCAGAGAGGAGCTATAACACCTGGGAAGAGTATATTGGTGGAACCTACTAGTGGGAACACAGGAATTGGTCTTGCCTTTATAGCAGCTTCAAGAGGATATAAGCTAATTTTGACAATGCCTGCTTCAATGAGTTTAGAAAGACGGGTTCTTTTGAAAGCATTTGGGGCCGAGCTTGTTTTGACTGATGCAGCAAAGGGCATGAATGGAGCAGTACAAAAAGCTGAAGAAATTTTAAAAAGTACCCCCAATTCATACATGCTTCAACAATTTGATAATCCTTCAAATCCTAAGGTTCATTATGAGACAACTGGCCCGGAGATATGGGAAGATACTAGAGGAAAGATAGATATTTTAGTTGCAGGAATTGGAACCGGTGGAACTGTTTCTGGAGCTGGCCAATTCCTAAAACAACAAAATCCGAAAATACAGGTTATTGGCGTAGAGCCTCTGGAAAGCAACATACTTACAGGTGGAAAGCCAGGACCTCACAAAATTCAGGGTATTGGGGCTGGTTTTGTGCCCAGGAATTTGGATCAAGATGTGCTTGATGAAGTTATAGCGATATCAAGTGATGAAGCAGTTGAAACTGCAAAGCAATTAGCACTCCAGGAAGGCTTGCTGGTGGGAATTTCTTCAGGAGCTGCAGCTGCAGCTGCTTTGAAGGTTGGAAAGAGGCCTGAGAATGCAGGAAAGCTTATTGGGGTTGTCTTCCCAAGCTTTGGTGAAAGATATTTGTCAACTATTCTTTTCCAGTCAATACGGGAAGAATGCGAGAAAATGCAACCTGAGCCATGA
>Glyma02g15640.1 sequence type=predicted peptide gene model=Glyma02g15640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSASLINSLTCSSPAPTQHCFAFTRTTATATATSLRQFNSHRPPPLTTRISSSPSTVVCKAVSVKPQTETEGLNIADDVTQLIGKTPMVYLNNIVKGSVANIAAKLEIMEPCCSVKDRIGFSMINDAEQRGAITPGKSILVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVLLKAFGAELVLTDAAKGMNGAVQKAEEILKSTPNSYMLQQFDNPSNPKVHYETTGPEIWEDTRGKIDILVAGIGTGGTVSGAGQFLKQQNPKIQVIGVEPLESNILTGGKPGPHKIQGIGAGFVPRNLDQDVLDEVIAISSDEAVETAKQLALQEGLLVGISSGAAAAAALKVGKRPENAGKLIGVVFPSFGERYLSTILFQSIREECEKMQPEP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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