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Report for Sequence Feature Glyma02g15510

Feature Type:gene_model
Chromosome:Gm02
Start:13999643
stop:14003682
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g15510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62460AT Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr5:25075545-25077072 FORWARD LENGTH=307 SoyBaseE_val: 2.00E-42ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR23012Panther MEMBRANE ASSOCIATED RING FINGER JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
PF12428PFAM Protein of unknown function (DUF3675) JGI ISS
UniRef100_B9SX71UniRef Annotation by Michelle Graham. Most informative UniRef hit: Membrane associated ring finger 1,8, putative n=1 Tax=Ricinus communis RepID=B9SX71_RICCO SoyBaseE_val: 6.00E-73ISS
UniRef100_C6T7K6UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T7K6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g15510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15510
ParalogEvidenceComments
Glyma07g32990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g137300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g15510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g15510
>Glyma02g15510.2   sequence type=CDS   gene model=Glyma02g15510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGACGACTTCATCGTCTGTATTGACCGGATCATTGCCTCCACGCCCTGTTTTGGATCAGTGGATGGAAGACAATGTGATGGTGTTGGTGTTGACCCATTAATAATCCCCGTTCCTGAAAATGGTGGAGAAGGGTGCTCCTCCTCCTCCTCGTCTTCATCTTCAAACAAGGATGATGATGATGATGATGTTGTTGTTGTTGTTGTTGAGTGCAGAATATGCCAGGAAGAAGATCTAGCACAAGCCATGGAGGCTCCTTGTTCCTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGTATCCAAAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAATCAGGCATTTTCACCGAATTATTCTCTTCCACCGGTCAGAAGCAATGCAATTATGGCGATTGATATAAGGCAAGAATGGGGGCATGATGCTGATCTCCATGTGGCTCTAGCTTCAGCAGAGCAGCAGTTGCTGCAAACTGAGTATGAAGATTATGCCATGTCACAAACCAGTAGCATTGCTTGCCTTCGCTCTGTCACTCTCATTTTGTTGATGATTTTGCTTGTACGCCAAGCTTTAATTCTCACAAAGAACTCTGTAACTGGGCAAGATGCATCGATAATCTTTAATTTTGAGATGTCAGTCCTTCAATTTGTTGGTGTTCTTTTGCCATGCTTTGCAATGGCACGTTCCTGGTACGCCATACAGAACCAAAGGAGAAGACAGGGTTAA
Predicted protein sequences of Glyma02g15510
>Glyma02g15510.2   sequence type=predicted peptide   gene model=Glyma02g15510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADDFIVCIDRIIASTPCFGSVDGRQCDGVGVDPLIIPVPENGGEGCSSSSSSSSSNKDDDDDDVVVVVVECRICQEEDLAQAMEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRSNAIMAIDIRQEWGHDADLHVALASAEQQLLQTEYEDYAMSQTSSIACLRSVTLILLMILLVRQALILTKNSVTGQDASIIFNFEMSVLQFVGVLLPCFAMARSWYAIQNQRRRQG*






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