SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73180 | AT | Annotation by Michelle Graham. TAIR10: Eukaryotic translation initiation factor eIF2A family protein | chr1:27518335-27521432 FORWARD LENGTH=513 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2315 | KOG | Predicted translation initiation factor related to eIF-3a | JGI | ISS | |
| PTHR13227 | Panther | NUCLEASE-RELATED | JGI | ISS | |
| PF08662 | PFAM | Eukaryotic translation initiation factor eIF2A | JGI | ISS | |
| UniRef100_G7JNL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 2A n=1 Tax=Medicago truncatula RepID=G7JNL0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JEZ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEZ2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma02g15500 not represented in the dataset |
Glyma02g15500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g33000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g137200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g15500.2 sequence type=transcript gene model=Glyma02g15500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTCATAATAACCCGTAACTGAACTGAGTTCCCTCTCCGGCGAGACAGTAAGTAACAAGCTTTTCAATTTCTCCGTCGTTTGGCTTCCAATGGCATCAAATAACCACTCACCACCTCTCGAGATATTAGTTCGAGGACCAGAAGATTTCTCGCTCTGGACCGGACCTCCCTTCGCGAACGGTCAACCAAGCATCAAGCTCGAGAAAGTGAAATGCATCAACGCGAAGTTCAGCGACGACGGATCCAAGCTCATGGTGACAAAATCGAACTCGCTGATTAGCGTCTACGATTGCAGAATCGCCGAAGAGATTAGGGCTTTTGAAGTCCCCAATGTCGTCGCCGCAGCTTTGTCGCCCAATGGAACTTACTTGCAGACCTTCCAGAAGCCTTCGGCGCCGCAGGAGAAGAACGTCACGCTGTGGAGCATCGAGACCGGTGCTGCTGTTCACCAGCAGTCACAGAAGAACATGACCAAAGCCAATTGGCCTGCAATTCAGTTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTACAATTTTTTGATACTGGGGATTTTTCGAAAGGAGTTGTCTGTCGGTTAAGAGTTCCCGGAGTTGCTGCTGCTGAGCTTTCTAGTTTACCAGGGTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATTTGCTTGTGGAAATGCGTCTCAAAGTCAACCTGTTGCTCGACGTAGTTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAGTTATGCTATCTGACCACGGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCCATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTATATGGATTTATGCCTGCTAAAGCAACTCTGTTCGACAAGAAGTGCAATCCTCTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGCTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGCTTTGGTAACTTGCCTGGTGATATGGTATTCTGGGATTACATTGATAAGAAACAACTTGGAGCCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCATTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGTTGATTGGAAACCAGAGTCACCTGGTAAGTTTGGTGATATTGCCGAATTAATTAAGTCTCTAAATTTGGTACAACTTGAAGATAAAAAACCATCAGGTCAAGGACCACCAAAGTCTACCCAGACTTCTACAAAGGCCTCTTCTGCCAACCCCACAACACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGAATGCATCTGCTATTCAGGCAGAGGTACCCAATCACAGAATCTATTCTCCTTCTTTCTTTCTATTCTTAATTGTCAATATAAATTTTCAGCAATACTTGAGCATGGCATAACTTTATAGCCAAATTGTTTTGCTATATGCATGTTTATGCATCTTTCCATGAACTCTTGGAGCCGAGTTTCATTTTTTAGTTTGTCTCTGATGATGCCTAAATGATCTGTATTTGCAGTTGTTTGGAGAGACTACTGCAGAAACACTGAGCAAGAATGCATTACGAAACAAGAAAAAGAGGGAAAAACAGAAGGAGAAAAAGGCTGCTTCTGATGCCAGTTCTTCATGATGGAATCAATGTTCTTCCTGACTCGTTCTAAATTGCTTTTCTACTACTGCACTCGCGCACCTGAAAATTTGAGGCTTTCAGATTTTGGTTTACTGGCAACTTTGGGCAGTTTTGGTTTGCTCAGATTTTGACGTGATTGAAGTCATGTTGTAGGTTTGTGCTTTCTTGAGTTTTCAGCTGGGATATAAAAGGTGGGAGAAGATAAATCTCTTTATCCTCATGATAAAAGAAGTATTTATTGTAAGAGAAGTGAAATTATACGTTGGTCACAAACATTATTTTGTTTCCGGTTGGGATATAAAAGGTGAGAGTAGAAGATAAATGCCCCTTTCTCCTCCCGATAAAATATGTATTTTTTGCAAGAGAAATGGAATTATAAGTAGGGTGCTTCACACGCGTGTACGTACATGCACACACGGGCATAAGAGTATATGGACAAGAAGTGTAGTTTCTAATACATACGGACAAAGTACAAAAAGAAACAAGAACAAAACTTAAATGTAGTTTTTAAGTTTGAGTGTTGCTCTTTGTTCGGAATGAATCTCATCTCAA
>Glyma02g15500.1 sequence type=CDS gene model=Glyma02g15500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCAAATAACCACTCACCACCTCTCGAGATATTAGTTCGAGGACCAGAAGATTTCTCGCTCTGGACCGGACCTCCCTTCGCGAACGGTCAACCAAGCATCAAGCTCGAGAAAGTGAAATGCATCAACGCGAAGTTCAGCGACGACGGATCCAAGCTCATGGTGACAAAATCGAACTCGCTGATTAGCGTCTACGATTGCAGAATCGCCGAAGAGATTAGGGCTTTTGAAGTCCCCAATGTCGTCGCCGCAGCTTTGTCGCCCAATGGAACTTACTTGCAGACCTTCCAGAAGCCTTCGGCGCCGCAGGAGAAGAACGTCACGCTGTGGAGCATCGAGACCGGTGCTGCTGTTCACCAGCAGTCACAGAAGAACATGACCAAAGCCAATTGGCCTGCAATTCAGTTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTACAATTTTTTGATACTGGGGATTTTTCGAAAGGAGTTGTCTGTCGGTTAAGAGTTCCCGGAGTTGCTGCTGCTGAGCTTTCTAGTTTACCAGGGTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATTTGCTTGTGGAAATGCGTCTCAAAGTCAACCTGTTGCTCGACGTAGTTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAGTTATGCTATCTGACCACGGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCCATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTATATGGATTTATGCCTGCTAAAGCAACTCTGTTCGACAAGAAGTGCAATCCTCTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGCTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGCTTTGGTAACTTGCCTGGTGATATGGTATTCTGGGATTACATTGATAAGAAACAACTTGGAGCCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCATTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGTTGATTGGAAACCAGAGTCACCTGGTAAGTTTGGTGATATTGCCGAATTAATTAAGTCTCTAAATTTGGTACAACTTGAAGATAAAAAACCATCAGGTCAAGGACCACCAAAGTCTACCCAGACTTCTACAAAGGCCTCTTCTGCCAACCCCACAACACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGAATGCATCTGCTATTCAGGCAGAGTTGTTTGGAGAGACTACTGCAGAAACACTGAGCAAGAATGCATTACGAAACAAGAAAAAGAGGGAAAAACAGAAGGAGAAAAAGGCTGCTTCTGATGCCAGTTCTTCATGA >Glyma02g15500.2 sequence type=CDS gene model=Glyma02g15500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCAAATAACCACTCACCACCTCTCGAGATATTAGTTCGAGGACCAGAAGATTTCTCGCTCTGGACCGGACCTCCCTTCGCGAACGGTCAACCAAGCATCAAGCTCGAGAAAGTGAAATGCATCAACGCGAAGTTCAGCGACGACGGATCCAAGCTCATGGTGACAAAATCGAACTCGCTGATTAGCGTCTACGATTGCAGAATCGCCGAAGAGATTAGGGCTTTTGAAGTCCCCAATGTCGTCGCCGCAGCTTTGTCGCCCAATGGAACTTACTTGCAGACCTTCCAGAAGCCTTCGGCGCCGCAGGAGAAGAACGTCACGCTGTGGAGCATCGAGACCGGTGCTGCTGTTCACCAGCAGTCACAGAAGAACATGACCAAAGCCAATTGGCCTGCAATTCAGTTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTACAATTTTTTGATACTGGGGATTTTTCGAAAGGAGTTGTCTGTCGGTTAAGAGTTCCCGGAGTTGCTGCTGCTGAGCTTTCTAGTTTACCAGGGTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATTTGCTTGTGGAAATGCGTCTCAAAGTCAACCTGTTGCTCGACGTAGTTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAGTTATGCTATCTGACCACGGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCCATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTATATGGATTTATGCCTGCTAAAGCAACTCTGTTCGACAAGAAGTGCAATCCTCTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGCTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGCTTTGGTAACTTGCCTGGTGATATGGTATTCTGGGATTACATTGATAAGAAACAACTTGGAGCCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCATTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGTTGATTGGAAACCAGAGTCACCTGGTAAGTTTGGTGATATTGCCGAATTAATTAAGTCTCTAAATTTGGTACAACTTGAAGATAAAAAACCATCAGGTCAAGGACCACCAAAGTCTACCCAGACTTCTACAAAGGCCTCTTCTGCCAACCCCACAACACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGAATGCATCTGCTATTCAGGCAGAGGTACCCAATCACAGAATCTATTCTCCTTCTTTCTTTCTATTCTTAATTGTCAATATAAATTTTCAGCAATACTTGAGCATGGCATAA
>Glyma02g15500.1 sequence type=predicted peptide gene model=Glyma02g15500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNNHSPPLEILVRGPEDFSLWTGPPFANGQPSIKLEKVKCINAKFSDDGSKLMVTKSNSLISVYDCRIAEEIRAFEVPNVVAAALSPNGTYLQTFQKPSAPQEKNVTLWSIETGAAVHQQSQKNMTKANWPAIQFSSDEATACRLATNEVQFFDTGDFSKGVVCRLRVPGVAAAELSSLPGSHVAAFVPESKGVPASVQIFACGNASQSQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQVDWKPESPGKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQTSTKASSANPTTQKPAAYRPPHAKNASAIQAELFGETTAETLSKNALRNKKKREKQKEKKAASDASSS* >Glyma02g15500.2 sequence type=predicted peptide gene model=Glyma02g15500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNNHSPPLEILVRGPEDFSLWTGPPFANGQPSIKLEKVKCINAKFSDDGSKLMVTKSNSLISVYDCRIAEEIRAFEVPNVVAAALSPNGTYLQTFQKPSAPQEKNVTLWSIETGAAVHQQSQKNMTKANWPAIQFSSDEATACRLATNEVQFFDTGDFSKGVVCRLRVPGVAAAELSSLPGSHVAAFVPESKGVPASVQIFACGNASQSQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQVDWKPESPGKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQTSTKASSANPTTQKPAAYRPPHAKNASAIQAEVPNHRIYSPSFFLFLIVNINFQQYLSMA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
