Report for Sequence Feature Glyma02g15460
Feature Type: gene_model
Chromosome: Gm02
Start: 13960498
stop: 13963677
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g15460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G23530 AT
Annotation by Michelle Graham. TAIR10: Zinc-finger domain of monoamine-oxidase A repressor R1 | chr2:10020652-10022804 REVERSE LENGTH=552
SoyBase E_val: 1.00E-85 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF10497 PFAM
Zinc-finger domain of monoamine-oxidase A repressor R1
JGI ISS
UniRef100_G7JNK7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle-associated 7-like protein n=1 Tax=Medicago truncatula RepID=G7JNK7_MEDTR
SoyBase E_val: 1.00E-105 ISS
UniRef100_I1JEY9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEY9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g15460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g15460
Paralog Evidence Comments
Glyma07g33031 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g15460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g136900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g15460
Coding sequences of Glyma02g15460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g15460.1 sequence type=CDS gene model=Glyma02g15460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAAATGGGCACTCGCAGAAAGAAGAGAGAAGAAGCCCCTCTTTCTCTCTCCGAAGATGATGATGGTGATGAAAATGAAAACTCCCAAAACGAAGGTTCCAAAAGGGTAAAAAACGAAGGTTACGAGCAAGCTAGGGAGCAAAGGATCAAAGAGAACATGGAGAGAATGCAGAAGCTTGGCTTATTCGACCTTTCTCATAAACTCAAACCCCTAAAGAAACAGAAGAAGCGCACCCACCAACCCAATCATTCACCCCAGAGACGCTCTTTCAGAATAATGAGCCGGGCACCAATTAACTATGCTGAGAGAGATTTTCGCGAGTCAGCAAGTAAGAAAAATGATGAAGTAGAGATTGTTATTCCAGAAGGTACAAACCCTGAAGTTTACACTGAAGAGCAGGAGAAGCTTCTGGGAGACTGTGAGAGTACTTGGGAATTGTATGTAGATGGATATGATGAAGATGGGAACCGTATATATGATCCAATCAAAGGAGAGACATGCCATCAATGCAGGCAGAAAACTCTTGGCCAGCATACTCATTGCAACAAATGCGAATTACTCCAAGGGCAATTTTGTGGAGATTGCTTGTACATGAGATATGGAGAAAATGTGGTAGAAGCCAACCATAACACAAAATGGACTTGCCCTCCTTGTCGGGATATTTGCAACTGCAGTCGTTGCCGCAGGGGAAAAGGTTGGATGCCTACTGGTAACATATACAGTAAGGTGTCAAAACTGGGTTTCAAATCTGTGGCTCATTATCTGATTAAAAATCGCCGCTCCAAGTTGGAAGGCTCAGATGCTGAAAACATAGTTCCTGAAGAAATATCAGAGGCAGAGGCATCTGCAGATACCACACCGAATAGACCAACTCGCACGAGGGCATCAAAGAAGAGAGCTTAG
Predicted protein sequences of Glyma02g15460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g15460.1 sequence type=predicted peptide gene model=Glyma02g15460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKMGTRRKKREEAPLSLSEDDDGDENENSQNEGSKRVKNEGYEQAREQRIKENMERMQKLGLFDLSHKLKPLKKQKKRTHQPNHSPQRRSFRIMSRAPINYAERDFRESASKKNDEVEIVIPEGTNPEVYTEEQEKLLGDCESTWELYVDGYDEDGNRIYDPIKGETCHQCRQKTLGQHTHCNKCELLQGQFCGDCLYMRYGENVVEANHNTKWTCPPCRDICNCSRCRRGKGWMPTGNIYSKVSKLGFKSVAHYLIKNRRSKLEGSDAENIVPEEISEAEASADTTPNRPTRTRASKKRA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
