Glyma02g15370 - SoyBase

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Report for Sequence Feature Glyma02g15370

Feature Type:	gene_model
Chromosome:	Gm02
Start:	13901705
stop:	13903649
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g15370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19010	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr3:6556306-6557862 REVERSE LENGTH=349	SoyBase	E_val: 1.00E-133	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0045431	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavonol synthase activity	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_A3QRM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Senescence-associated nodulin 1A n=1 Tax=Glycine max RepID=A3QRM3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6TAL1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TAL1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g15370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15370

Paralog	Evidence	Comments
Glyma07g33090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g136000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g15370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g15370

Limit To All Plant Sequences

>Glyma02g15370.2   sequence type=transcript   gene model=Glyma02g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGATAAGATAATAAAAAGAAAGAGATAAAGAAAATATGGGTTTCAAATGTGGGTTCCAAGTTCAACAATCATTTTTGAATCTTAAATAAGAGAACAGCCCAAAACCTTTCAAAATACACATGCTGCAAATTGCTCACCCAATCACCAGCCATGGGAGAGGTTGACGCAGCATTCATCCAAGACCCACCACACAGGCCAAAGCTCTCCACCATCCAAGCCGAAGGAATTCCCATAATTGATCTCTCTCCAATAACCAACCACAGAGTTTCAGACCCTTCTGCTATTGAAGGCTTAGTGAAGGAGATAGGTAGTGCATGCAACGAGTGGGGTTTCTTCCAAGTAACAAACCATGGAGTGCCCCTCACTCTAAGGCAAAACATTGAGAAAGCCTCAAAATTGTTCTTTGCACAGAGTGCGGAGGAAAAGAGAAAGGTTAGCAGAAATGAGAGCTCTCCAGCGGGTTATTATGACACAGAACACACCAAAAACGTTAGGGACTGGAAAGAAGTCTTTGATTTTCTAGCCAAAGAACCCACTTTCATTCCTGTCACTTCTGATGAACATGATGATCGAGTCAATCAGTGGACTAATCAATCCCCTGAATACCCTCTAAACTTTAGGGTTGTAACACAAGAGTATATTCAAGAGATGGAAAAGCTGTCCTTTAAGATTTTAGAGCTTATAGCTTTGAGCTTAGGCCTTGAAGCAAAGAGGTTTGAAGAATTTTTCATCAAAGACCAAACTAGCTTTATTCGACTCAACCACTATCCTCCATGCCCTTATCCTGACCTTGCTCTTGGCGTCGGTCGACACAAGGACCCTGGTGCCTTAACCATTCTTGCACAGGATGAGGTTGGAGGACTTGAAGTGAGACGTAAAGCAGATCAAGAGTGGATAAGAGTGAAACCCACCCCAGATGCTTATATCATCAACATTGGTGACACTGTTCAGGTGCCAGTGTAGTACCATATTGAAAACTGAAAATTTTGAAATTTCGGTGTCTGGTTCTAACACACTCTATGATTGGTTGAAATTTATTAGAAACTACAAAATCATGAAAGGACCGTTAAGTAAGACGTCAGAAGCACAATTTTCTTGTAATTTTCAATAAATTTAAACCAATGGTAAGTGTGTTAGGAAAAGTTTATTAGAGAATATGTTGCTAGGATTTCTCTAATTTTATTATCCCTTAGTGAAGAAAAACTTTTCACTTGAGGATTGGGGTGGTTTGTGCAGGTTTGGAGCAATGATGCATATGAGAGTGTGGATCACAGAGTGGTGGTCAACTCTGAGAAGGAAAGGTTTTCCATTCCTTTCTTCTTCTTCCCTGCACACGACACCGAAGTTAAGCCTTTGGAGGAGCTGATAAATGAGCAAAACCCTTCAAAATATAGGCCATACAAGTGGGGCAAGTTTCTTGTCCACAGAGGGAACAGCAATTTTAAGAAGCAAAATGAGGAGAACATTCAAATTTATCATTACAAGATAGCTTAAAGGGTAAATTGTGTATGATATTATCATGATATGAGGCAGCGTTGATCCAAGACAACGTTACTGATATGAATAAGTCCGATCAACTTCACTGCTAAATTTCCTAGTGTGCCTTATGTATTGAACAATCACTGAATAAAAGAACTAAATTATTACCATTTATCATGTTTATCTCAAAAATTGAAATTGCATTGGACTTCAAAATTTACTGTTTTAA

Coding sequences of Glyma02g15370

Limit To All Plant Sequences

>Glyma02g15370.1   sequence type=CDS   gene model=Glyma02g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGGTTGACGCAGCATTCATCCAAGACCCACCACACAGGCCAAAGCTCTCCACCATCCAAGCCGAAGGAATTCCCATAATTGATCTCTCTCCAATAACCAACCACAGAGTTTCAGACCCTTCTGCTATTGAAGGCTTAGTGAAGGAGATAGGTAGTGCATGCAACGAGTGGGGTTTCTTCCAAGTAACAAACCATGGAGTGCCCCTCACTCTAAGGCAAAACATTGAGAAAGCCTCAAAATTGTTCTTTGCACAGAGTGCGGAGGAAAAGAGAAAGGTTAGCAGAAATGAGAGCTCTCCAGCGGGTTATTATGACACAGAACACACCAAAAACGTTAGGGACTGGAAAGAAGTCTTTGATTTTCTAGCCAAAGAACCCACTTTCATTCCTGTCACTTCTGATGAACATGATGATCGAGTCAATCAGTGGACTAATCAATCCCCTGAATACCCTCTAAACTTTAGGGTTGTAACACAAGAGTATATTCAAGAGATGGAAAAGCTGTCCTTTAAGATTTTAGAGCTTATAGCTTTGAGCTTAGGCCTTGAAGCAAAGAGGTTTGAAGAATTTTTCATCAAAGACCAAACTAGCTTTATTCGACTCAACCACTATCCTCCATGCCCTTATCCTGACCTTGCTCTTGGCGTCGGTCGACACAAGGACCCTGGTGCCTTAACCATTCTTGCACAGGATGAGGTTGGAGGACTTGAAGTGAGACGTAAAGCAGATCAAGAGTGGATAAGAGTGAAACCCACCCCAGATGCTTATATCATCAACATTGGTGACACTGTTCAGGTTTGGAGCAATGATGCATATGAGAGTGTGGATCACAGAGTGGTGGTCAACTCTGAGAAGGAAAGGTTTTCCATTCCTTTCTTCTTCTTCCCTGCACACGACACCGAAGTTAAGCCTTTGGAGGAGCTGATAAATGAGCAAAACCCTTCAAAATATAGGCCATACAAGTGGGGCAAGTTTCTTGTCCACAGAGGGAACAGCAATTTTAAGAAGCAAAATGAGGAGAACATTCAAATTTATCATTACAAGATAGCTTAA

>Glyma02g15370.2   sequence type=CDS   gene model=Glyma02g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGGTTGACGCAGCATTCATCCAAGACCCACCACACAGGCCAAAGCTCTCCACCATCCAAGCCGAAGGAATTCCCATAATTGATCTCTCTCCAATAACCAACCACAGAGTTTCAGACCCTTCTGCTATTGAAGGCTTAGTGAAGGAGATAGGTAGTGCATGCAACGAGTGGGGTTTCTTCCAAGTAACAAACCATGGAGTGCCCCTCACTCTAAGGCAAAACATTGAGAAAGCCTCAAAATTGTTCTTTGCACAGAGTGCGGAGGAAAAGAGAAAGGTTAGCAGAAATGAGAGCTCTCCAGCGGGTTATTATGACACAGAACACACCAAAAACGTTAGGGACTGGAAAGAAGTCTTTGATTTTCTAGCCAAAGAACCCACTTTCATTCCTGTCACTTCTGATGAACATGATGATCGAGTCAATCAGTGGACTAATCAATCCCCTGAATACCCTCTAAACTTTAGGGTTGTAACACAAGAGTATATTCAAGAGATGGAAAAGCTGTCCTTTAAGATTTTAGAGCTTATAGCTTTGAGCTTAGGCCTTGAAGCAAAGAGGTTTGAAGAATTTTTCATCAAAGACCAAACTAGCTTTATTCGACTCAACCACTATCCTCCATGCCCTTATCCTGACCTTGCTCTTGGCGTCGGTCGACACAAGGACCCTGGTGCCTTAACCATTCTTGCACAGGATGAGGTTGGAGGACTTGAAGTGAGACGTAAAGCAGATCAAGAGTGGATAAGAGTGAAACCCACCCCAGATGCTTATATCATCAACATTGGTGACACTGTTCAGGTGCCAGTGTAG

Predicted protein sequences of Glyma02g15370

Limit To All Plant Sequences

>Glyma02g15370.1   sequence type=predicted peptide   gene model=Glyma02g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEVDAAFIQDPPHRPKLSTIQAEGIPIIDLSPITNHRVSDPSAIEGLVKEIGSACNEWGFFQVTNHGVPLTLRQNIEKASKLFFAQSAEEKRKVSRNESSPAGYYDTEHTKNVRDWKEVFDFLAKEPTFIPVTSDEHDDRVNQWTNQSPEYPLNFRVVTQEYIQEMEKLSFKILELIALSLGLEAKRFEEFFIKDQTSFIRLNHYPPCPYPDLALGVGRHKDPGALTILAQDEVGGLEVRRKADQEWIRVKPTPDAYIINIGDTVQVWSNDAYESVDHRVVVNSEKERFSIPFFFFPAHDTEVKPLEELINEQNPSKYRPYKWGKFLVHRGNSNFKKQNEENIQIYHYKIA*

>Glyma02g15370.2   sequence type=predicted peptide   gene model=Glyma02g15370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEVDAAFIQDPPHRPKLSTIQAEGIPIIDLSPITNHRVSDPSAIEGLVKEIGSACNEWGFFQVTNHGVPLTLRQNIEKASKLFFAQSAEEKRKVSRNESSPAGYYDTEHTKNVRDWKEVFDFLAKEPTFIPVTSDEHDDRVNQWTNQSPEYPLNFRVVTQEYIQEMEKLSFKILELIALSLGLEAKRFEEFFIKDQTSFIRLNHYPPCPYPDLALGVGRHKDPGALTILAQDEVGGLEVRRKADQEWIRVKPTPDAYIINIGDTVQVPV*

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