Glyma02g15180 - SoyBase

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Report for Sequence Feature Glyma02g15180

Feature Type:	gene_model
Chromosome:	Gm02
Start:	13685926
stop:	13690934
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g15180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15730	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:6849797-6851881 FORWARD LENGTH=344	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7JMG0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulation protein H n=1 Tax=Medicago truncatula RepID=G7JMG0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JEW1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEW1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g15180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15180

Paralog	Evidence	Comments
Glyma07g33310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g134300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g15180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g15180

Limit To All Plant Sequences

>Glyma02g15180.2   sequence type=transcript   gene model=Glyma02g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTCAAATCCTTCTTACTCCGAACGATACTCGAAAAAACGAAACTCTTCCAAAACGAAGAGAGAGTATGGCATAGCAAAAAATGCAGTATTTATGTTTATCTGAAAGCAACGGTCTAATATTAGAAGCCTCAAATCATTTCGTTCTTCACGAGGCCGAAAAATAATTCAAAAAAATATAAAAAGGGAGAAAAAAAGAAAAGAAAAAGCTCAGTGTCACGCACAGGCATCATCGAACCCCTTTTGCTTTTTTCCTTCAAAAAAACATTTTTTTTCCTGGGTCGTTGCTGGTTGCAGCAATGAGAGCTGAAACATAAGCTTTAGAATAAAAAAAACGGAGAAAGAAATTCAAAAGGGTATCTGAAAAATGCCTTTTCATCCGTATTCCTTTTGAGCTCGTCTACAATGGCCGATGATCTCTCTTCCTTAGCCAAGGATGTTTTGCTTGTGAAGGGTTTGAAGAGTTCCACTTTGGTGTGGAGGCTTGTTGTTTTGACCCTTGCAATGGTATGTGGCGTGTATATATGTTCAATTTGTCTGAAGCAGATAGGCACTAGCAGCAAGATTGGTTTTCTAGATATCAAGGTTGTTCAAAAGCCATGTCCAGAACCTAATATTGAACCTTGGGAGATTCCTTATGTGCACTACCCTAACCCCAAAACTTACAGCAGGTGAAATTATAATATACTGCTGCTTAAATTTAAGGTTATTTTTGCAGAATCTGTTTGAATTTTATTTATATTGCTTCATTTGGTATGTCTTTGTTAGGGCGGAATGTGCTTGCCACCCTGTGCGCTATTTCGCTATTTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACGTTTTTGAACAGTCACGCTAACATAAGCTCGAATGGAGAAATCTTTTCGGTTAAGGTGAGAAGGAGTAACATGTCAACAATAACAGAGACTCTTGATACAATTTATAATCTAGACTGGCTAAGTAGTGCTTCGAAAAATGAGTGCACCACTGCTGTTGGTTTGAAATGGATGCTTAATCAGGGATTGATGCAGCATCATGAACAAATTGCAGAGTACTTCAGAATACATGGTGTTTCGCTCATATTTCTTTTCAGAAGGAATCTTTTGCGCCGGATGGTTTCTGTACTTGCAAATGAATATGATAGGAATGCTAAGATATTGAATGGAACTCACAAATCTCATGTGCATTCACCCCAGGAGGCAGAAATACTTGCAAAATACAAGCCAACAATCAATTCAACATTGTTGATTGCACAACTTAAACAAGTGAATGAAACCACCACCAAAGCTTTGGAATATTTCAAGAGCACTCGGCACATTCTCCTGTACTACGAAGACGTCGTCAAGAATCGCACCAAATTAAGGGACGTTCAGGATTTTCTAAGGGTTCCTCAAATGAAGTTAAAGAGTCGTCAAGTGAAGATACACAAAGGGTCCTTATCTAGCCAAGTTGAGAATTGGAATGATATAAGCAAGGCGCTAACAGGAACACCATATGAAAGTTTCATCCATGAAGATTATCGTAGGTAAACTGGTGGGTATGTACATACACCACGTTTTGCCTTTTTCCCTTTTAACATCCCTCTAATCTTTTGTTGACAAGTCACTACTGCAAGAGCCAACAGTACATACAACCTCCCTGTTGAAATTTTGGCCACGGCCCTCTCTCTCATTTTTGTACTCAGTTCATGCTATTTTTTTTTTTGTCTTCCCCATTCAATTGATATTTAATTCATTCTTTGTACTCGTGCAACTACCATGTTGTGTGGTAGTAACACTTTGTATTGGCGCATCAAGGAAATTTGCAATTTCAACTGCAAGATATTTTTTTTAGATCTAATTGTAAATTGTTCTTTTTTTTTTCTTTTGTATATTTGGTTCCATGGTGAATTATAAGATATTTCCATAAGTTTTGGTCGTTTAGATGGATTATGAGACTAATCTTCGATTTGGGGTTTAGTCACACTTAAAGTTATTCATCTTTATGTAAGAGT

>Glyma02g15180.3   sequence type=transcript   gene model=Glyma02g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTTCCTTCAAATCTCTCAAAACATGGGGTAGAAGATTCTATTTTTGATTTTGTTTTAACATGGGGTGGCACGTGAAATTGTCCGATCTGGTTGCTTAAAATAACCCCAACGAATATGTGTGCTTTTGAGGTCAATGGGTATTTGGCATTTGATTGGGTAGCTTCCTTGAGATGATGTTTTGCTTGTGAAGGGTTTGAAGAGTTCCACTTTGGTGTGGAGGCTTGTTGTTTTGACCCTTGCAATGGTATGTGGCGTGTATATATGTTCAATTTGTCTGAAGCAGATAGGCACTAGCAGCAAGATTGGTTTTCTAGATATCAAGGTTGTTCAAAAGCCATGTCCAGAACCTAATATTGAACCTTGGGAGATTCCTTATGTGCACTACCCTAACCCCAAAACTTACAGCAGGGCGGAATGTGCTTGCCACCCTGTGCGCTATTTCGCTATTTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACGTTTTTGAACAGTCACGCTAACATAAGCTCGAATGGAGAAATCTTTTCGGTTAAGGTGAGAAGGAGTAACATGTCAACAATAACAGAGACTCTTGATACAATTTATAATCTAGACTGGCTAAGTAGTGCTTCGAAAAATGAGTGCACCACTGCTGTTGGTTTGAAATGGATGCTTAATCAGGGATTGATGCAGCATCATGAACAAATTGCAGAGTACTTCAGAATACATGGTGTTTCGCTCATATTTCTTTTCAGAAGGAATCTTTTGCGCCGGATGGTTTCTGTACTTGCAAATGAATATGATAGGAATGCTAAGATATTGAATGGAACTCACAAATCTCATGTGCATTCACCCCAGGAGGCAGAAATACTTGCAAAATACAAGCCAACAATCAATTCAACATTGTTGATTGCACAACTTAAACAAGTGAATGAAACCACCACCAAAGCTTTGGAATATTTCAAGAGCACTCGGCACATTCTCCTGTACTACGAAGACGTCGTCAAGAATCGCACCAAATTAAGGGACGTTCAGGATTTTCTAAGGGTTCCTCAAATGAAGTTAAAGAGTCGTCAAGTGAAGATACACAAAGGGTCCTTATCTAGCCAAGTTGAGAATTGGAATGATATAAGCAAGGCGCTAACAGGAACACCATATGAAAGTTTCATCCATGAAGATTATCGTAGGTAAACTGGTGGGTATGTACATACACCACGTTTTGCCTTTTTCCCTTTTAACATCCCTCTAATCTTTTGTTGACAAGTCACTACTGCAAGAGCCAACAGTACATACAACCTCCCTGTTGAAATTTTGGCCACGGCCCTCTCTCTCATTTTTGTACTCAGTTCATGCTATTTTTTTTTTTGTCTTCCCCATTCAATTGATATTTAATTCATTCTTTGTACTCGTGCAACTACCATGTTGTGTGGTAGTAACACTTTGTATTGGCGCATCAAGGAAATTTGCAATTTCAACTGCAAGATATTTTTTTTAGATCTAATTGTAAATTGTTCTTTTTTTTTTCTTTTGTATATTTGGTTCCATGGTGAATTATAAGATATTTCCATAAGTTTTGGTCGTTTAGATGGATTATGAGACTAATCTTCGATTTGGGGTTTAGTCACACTTAAAGTTATTCATCTTTATGTAAGAGT

Coding sequences of Glyma02g15180

Limit To All Plant Sequences

>Glyma02g15180.1   sequence type=CDS   gene model=Glyma02g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATGATCTCTCTTCCTTAGCCAAGGATGTTTTGCTTGTGAAGGGTTTGAAGAGTTCCACTTTGGTGTGGAGGCTTGTTGTTTTGACCCTTGCAATGGTATGTGGCGTGTATATATGTTCAATTTGTCTGAAGCAGATAGGCACTAGCAGCAAGATTGGTTTTCTAGATATCAAGGTTGTTCAAAAGCCATGTCCAGAACCTAATATTGAACCTTGGGAGATTCCTTATGTGCACTACCCTAACCCCAAAACTTACAGCAGGGCGGAATGTGCTTGCCACCCTGTGCGCTATTTCGCTATTTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACGTTTTTGAACAGTCACGCTAACATAAGCTCGAATGGAGAAATCTTTTCGGTTAAGGTGAGAAGGAGTAACATGTCAACAATAACAGAGACTCTTGATACAATTTATAATCTAGACTGGCTAAGTAGTGCTTCGAAAAATGAGTGCACCACTGCTGTTGGTTTGAAATGGATGCTTAATCAGGGATTGATGCAGCATCATGAACAAATTGCAGAGTACTTCAGAATACATGGTGTTTCGCTCATATTTCTTTTCAGAAGGAATCTTTTGCGCCGGATGGTTTCTGTACTTGCAAATGAATATGATAGGAATGCTAAGATATTGAATGGAACTCACAAATCTCATGTGCATTCACCCCAGGAGGCAGAAATACTTGCAAAATACAAGCCAACAATCAATTCAACATTGTTGATTGCACAACTTAAACAAGTGAATGAAACCACCACCAAAGCTTTGGAATATTTCAAGAGCACTCGGCACATTCTCCTGTACTACGAAGACGTCGTCAAGAATCGCACCAAATTAAGGGACGTTCAGGATTTTCTAAGGGTTCCTCAAATGAAGTTAAAGAGTCGTCAAGTGAAGATACACAAAGGGTCCTTATCTAGCCAAGTTGAGAATTGGAATGATATAAGCAAGGCGCTAACAGGAACACCATATGAAAGTTTCATCCATGAAGATTATCGTAGGTAA

>Glyma02g15180.2   sequence type=CDS   gene model=Glyma02g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCACTACCCTAACCCCAAAACTTACAGCAGGTGAAATTATAATATACTGCTGCTTAAATTTAAGGTTATTTTTGCAGAATCTGTTTGAATTTTATTTATATTGCTTCATTTGGTATGTCTTTGTTAGGGCGGAATGTGCTTGCCACCCTGTGCGCTATTTCGCTATTTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACGTTTTTGAACAGTCACGCTAACATAAGCTCGAATGGAGAAATCTTTTCGGTTAAGGTGAGAAGGAGTAACATGTCAACAATAACAGAGACTCTTGATACAATTTATAATCTAGACTGGCTAAGTAGTGCTTCGAAAAATGAGTGCACCACTGCTGTTGGTTTGAAATGGATGCTTAATCAGGGATTGATGCAGCATCATGAACAAATTGCAGAGTACTTCAGAATACATGGTGTTTCGCTCATATTTCTTTTCAGAAGGAATCTTTTGCGCCGGATGGTTTCTGTACTTGCAAATGAATATGATAGGAATGCTAAGATATTGAATGGAACTCACAAATCTCATGTGCATTCACCCCAGGAGGCAGAAATACTTGCAAAATACAAGCCAACAATCAATTCAACATTGTTGATTGCACAACTTAAACAAGTGAATGAAACCACCACCAAAGCTTTGGAATATTTCAAGAGCACTCGGCACATTCTCCTGTACTACGAAGACGTCGTCAAGAATCGCACCAAATTAAGGGACGTTCAGGATTTTCTAAGGGTTCCTCAAATGAAGTTAAAGAGTCGTCAAGTGAAGATACACAAAGGGTCCTTATCTAGCCAAGTTGAGAATTGGAATGATATAAGCAAGGCGCTAACAGGAACACCATATGAAAGTTTCATCCATGAAGATTATCGTAGGTAA

>Glyma02g15180.3   sequence type=CDS   gene model=Glyma02g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATGTGGCGTGTATATATGTTCAATTTGTCTGAAGCAGATAGGCACTAGCAGCAAGATTGGTTTTCTAGATATCAAGGTTGTTCAAAAGCCATGTCCAGAACCTAATATTGAACCTTGGGAGATTCCTTATGTGCACTACCCTAACCCCAAAACTTACAGCAGGGCGGAATGTGCTTGCCACCCTGTGCGCTATTTCGCTATTTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACGTTTTTGAACAGTCACGCTAACATAAGCTCGAATGGAGAAATCTTTTCGGTTAAGGTGAGAAGGAGTAACATGTCAACAATAACAGAGACTCTTGATACAATTTATAATCTAGACTGGCTAAGTAGTGCTTCGAAAAATGAGTGCACCACTGCTGTTGGTTTGAAATGGATGCTTAATCAGGGATTGATGCAGCATCATGAACAAATTGCAGAGTACTTCAGAATACATGGTGTTTCGCTCATATTTCTTTTCAGAAGGAATCTTTTGCGCCGGATGGTTTCTGTACTTGCAAATGAATATGATAGGAATGCTAAGATATTGAATGGAACTCACAAATCTCATGTGCATTCACCCCAGGAGGCAGAAATACTTGCAAAATACAAGCCAACAATCAATTCAACATTGTTGATTGCACAACTTAAACAAGTGAATGAAACCACCACCAAAGCTTTGGAATATTTCAAGAGCACTCGGCACATTCTCCTGTACTACGAAGACGTCGTCAAGAATCGCACCAAATTAAGGGACGTTCAGGATTTTCTAAGGGTTCCTCAAATGAAGTTAAAGAGTCGTCAAGTGAAGATACACAAAGGGTCCTTATCTAGCCAAGTTGAGAATTGGAATGATATAAGCAAGGCGCTAACAGGAACACCATATGAAAGTTTCATCCATGAAGATTATCGTAGGTAA

Predicted protein sequences of Glyma02g15180

Limit To All Plant Sequences

>Glyma02g15180.1   sequence type=predicted peptide   gene model=Glyma02g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADDLSSLAKDVLLVKGLKSSTLVWRLVVLTLAMVCGVYICSICLKQIGTSSKIGFLDIKVVQKPCPEPNIEPWEIPYVHYPNPKTYSRAECACHPVRYFAILSMQRSGSGWFETFLNSHANISSNGEIFSVKVRRSNMSTITETLDTIYNLDWLSSASKNECTTAVGLKWMLNQGLMQHHEQIAEYFRIHGVSLIFLFRRNLLRRMVSVLANEYDRNAKILNGTHKSHVHSPQEAEILAKYKPTINSTLLIAQLKQVNETTTKALEYFKSTRHILLYYEDVVKNRTKLRDVQDFLRVPQMKLKSRQVKIHKGSLSSQVENWNDISKALTGTPYESFIHEDYRR*

>Glyma02g15180.2   sequence type=predicted peptide   gene model=Glyma02g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCTTLTPKLTAGEIIIYCCLNLRLFLQNLFEFYLYCFIWYVFVRAECACHPVRYFAILSMQRSGSGWFETFLNSHANISSNGEIFSVKVRRSNMSTITETLDTIYNLDWLSSASKNECTTAVGLKWMLNQGLMQHHEQIAEYFRIHGVSLIFLFRRNLLRRMVSVLANEYDRNAKILNGTHKSHVHSPQEAEILAKYKPTINSTLLIAQLKQVNETTTKALEYFKSTRHILLYYEDVVKNRTKLRDVQDFLRVPQMKLKSRQVKIHKGSLSSQVENWNDISKALTGTPYESFIHEDYRR*

>Glyma02g15180.3   sequence type=predicted peptide   gene model=Glyma02g15180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCGVYICSICLKQIGTSSKIGFLDIKVVQKPCPEPNIEPWEIPYVHYPNPKTYSRAECACHPVRYFAILSMQRSGSGWFETFLNSHANISSNGEIFSVKVRRSNMSTITETLDTIYNLDWLSSASKNECTTAVGLKWMLNQGLMQHHEQIAEYFRIHGVSLIFLFRRNLLRRMVSVLANEYDRNAKILNGTHKSHVHSPQEAEILAKYKPTINSTLLIAQLKQVNETTTKALEYFKSTRHILLYYEDVVKNRTKLRDVQDFLRVPQMKLKSRQVKIHKGSLSSQVENWNDISKALTGTPYESFIHEDYRR*

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