Glyma02g15080 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g15080

Feature Type:	gene_model
Chromosome:	Gm02
Start:	13626822
stop:	13631584
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g15080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15695	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF829, transmembrane 53 \| chr2:6834194-6836336 REVERSE LENGTH=420	SoyBase	E_val: 2.00E-155	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2521	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12265	Panther	UNCHARACTERIZED	JGI		ISS
PF05705	PFAM	Eukaryotic protein of unknown function (DUF829)	JGI		ISS
UniRef100_I1JEV4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEV4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2R179	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R179_ORYSJ	SoyBase	E_val: 2.00E-113	ISS

Expression Patterns of Glyma02g15080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15080

Paralog	Evidence	Comments
Glyma07g33370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g133600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g15080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g15080

Limit To All Plant Sequences

>Glyma02g15080.2   sequence type=transcript   gene model=Glyma02g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTCTACAAGCAACATTTTAGGTCTTTTTCCCATTACACAAGTACAAAAAATTACCGTGGGAAGGTCATGTTCAAATTGAGACGCCTGAAAGGTTAAAAAACGCAAGAATACAACTCCACGTTAAAACGCTGGCGCGGAAAGCAAATCTCTGTCATCATCATCTCATGTGGGTCTCTCATTGCTCATATTGATTTGGCATTTCTTACTGAATAATACAACGAAGGGATGAGCCATTCGTGACCGTGAATTCGTGCTCCATATTTTACCCACAACTCAAAGACCTACCACGAAATCCAGCATCATCCATCATTACCCACCCATTAACCAATCGAATTAAGACTCAACAGAAAGCACCACCCTTCACTGCTCCCACATAGAAAAGCTTCCAACTTTGCAATTTCCCAGCTGAAATTCGCTCGTTTCGGTTACTGGGTCGGTCTCCGAGCTATGCGTGGTGGTGGCTTCGCCGTCAGAGGCGGTAACATCTACTGGGGGAGAAAAGAGGAAACTGATTTCAGAGGAATCGTTGTAATCTTCGCCTGGGTTTCTGTTCCGCAGAACCTGTTACAAGAATTCGTTGATCTGTGTTCTTCTTTGAGGTGGAATTCCCTTGTTTGTTTTGCCCATTATCTCTCAGCGTAAGTTTTTTTTTTTCTTGTTCTGGTTTTTGTTTTTGTTTTTTTTTGGCTTTCAACGTCGTGGTTTCACTTATCTCTATTTGGTGTAGTTGTTTTTGTGTGACTTGTGAACTGCTTTCACCGGTTATCAGATGAAATTAGTGGATCAACAATTTAATAAAATTGACGGCCTTTTTTTTAAAAAAAATAGGCAAATGTTAATTGTTAATTTGTTAGTTTTTTTTTTAGTAGAAGGTGGAACCCGGGATTTTTCTCTCCTTCCATTCTTTCTTTCTTAACCATCTGACTAACCTTATATCTCCAAATTGATGGGCTTTGTAATAGATGAGGATGAATAGTTCTAAAAACCAGAGCTTTGTTACACTATTTCTTAATGTTGGTGTCACTTTGTTGTGGATGATTTTAAGGTTTGTGTTTCAAATTGTTGTGCTTCTGGGACAGAATAGTTATCTTTTTAAAAAAATAAAAATTCTTGGGGTTTTTATTTATTTGTTTTCCATTTTTCTTTGAGGAAGCTGATAGGGATGCACCAACAAGAGAGAGGAGAGCTTTTTGAATTGCATGTCACTTTTGCCTAACCATGTGGAATTAGAATAGAAGCAGAAGTTTGTTTGGCTTGGAAAGATGCTTTACACGTGAAAGTCGGAGAATGCTATTTAATGTCGCGTTTAATTGTATGTTGGCACAGATCCATAGATTAGAATTAGGTTTGCACCATCCATTAGTTATTTGTCTCCAGTTGGTGAAGAAGTAAGAGAGAATGAGAGAGAATATTTATGAAGTTCATATGTAGTTGGTGGAAGCTATATAATAGCTTGCTTTGTCAACTGGAATTAGAGGGGACCATGTGCTAAGAATAGAATAAAAGAGTTATTCTCAATACTGGTAGGAGGTAATGTATATCTAGCTTTTAAATTAAGAAAATTGTTTGGTTGGAGAGGTTTAATTATGGTTTACTTACTTGATTAACACCATAATTTAATGTTGAATCTTGTGAGATAGCTATGGATTTATCTGCAATTCTTTAGGAAGGTTTGTGCTCCCTTTTTGATGCATAGGGAAATATTGGATACTTTTGGGGAATATATATTTCACTACTACACTTGTTGGGAAGCGTTTAATTCTGGTTGTAGTGTACTGCAACGAATTTCAAATAGATTTTCAAGCATTGAAAAAGGAAAAAGGAAGTTGTACTTCCTGTTAGGTTAATGAAATTATCCAGTGACAATATATGAAATGCATTTGTATGTGGTTTGGCATTATACTATTATCCTAAGACCCTATTTGGATCAACTTCTCTGTAAGTACTTATAGGAGTAGAAAATAAGAAGGTAAAAGGATTGAGCTTCTTCCATAAGCTAAAATCAGCTTATGCACTTAACTTCTATAGAAGTTCTCTCATTTAACTTTCCAAAAACTTAAGTGCATAAGTTGATTTTAGCTTATCGGAAAAGTTCAATTCATTTTAGCTTTTTATTTTCTTCTCCTATAAGAAAAAGTTTATCTTAACATGGCCTAAATCCTTTTCTGCCAAACACTTAAGTGACATGCTCAAGTTGTAACCAACTAAATATCTGTTGAGTTTCCATGATGAAAGTGCCATGCCATTGGCATTTTGCGTTCTTGATGAACTTATTGAGGAGCTAAGAACTAGGTCATGTCCTGTTGTATTTGCTGCTTTTTCTGCTGGGTCAAAAGCATGTCTGTTCAGGGTATTTCAGCTTATTGATGGAAGATGTGAAACTCCGCTCAACTTGCCTAACTATCAATTACTTAGGAACTGTCTTTCTGGACACATATATGATTCTGGTCCAATAGATGTTACAAGTGATTTTGGCTTCCGCTTCACACTACACCCCTCCATTGTAAAAGTGCCTGGACCATCAAAACTTGTTTCTTGGGTAGCAAAATCTGTTACCTCTGGTTTGGATGCTTTGTACCTAACTAGATTTGAATCCCAAGCTGCTGAGCATTGGCAGGCTTTATATTCTTCTGTTAATTTTGGAGCTCCATTTCTCATTTTATGTTCTGAGAATGATGACCTTGTGCGATACCAAAGTATCTATGAATTTGCTCAACAACTACGCAATCTCAGTGGTGATGTCAACCTTGTAAATTTCAGTAGCTCCTCTCACCTTGGTCATTACAAACACCATCCAATTGAATATAGAGCTGCTGTGAGCCATTTATTAGAGAAGGCTTCTTCAATATATTCACAAAAAATGTTGCTTGAACGAGAAAGAACTGGTATGGATGGTACACAGGATGAGATATCTGAGTTAATCTGTGACCTGCAGAAGGTGGCAATCAATTCAAATAAGAGCCTTAGAAGAGTTGCAGTTGGGCCAACCGACCACTTCTTTTTGCCTAGTTCAGCAGGACATTACAGTGATAGAGAATCTGGTGCTCCGCAAGACGAACAAAAAGAAAAACCTGTTTTTGTACCTAGCTTCCCAAGCATCAGCGCTCATAGTGTCCTTGGCCAATTTCTTTTCGACGTTTGTGTTCCAAAGAATGTTGAGGGTTGGGATGTGAAATCTTCTGGGAATCTAAATGGGAGGTCATGTGCTTCAGCTCCAAGGCATTCACTATTCAGGGGTACTAAACGCATCGGTCGGTCCAAATTATGAAGTTGTTCCCATATCTGACTTGAGGAGATACTTTATGATAAACCTGTTTGAAACATCAGCAGTTTCCCTAGACAATACAGGAAGGTATGATAGATTTTGGTGCAATGATTGGCTGTTATGTCTGGCAGGGGACATGTAATGGCTGCAATGGTTCAACAATTAATTCCTTGGCACTTTTGAGAAAGTGATGGGGTGATGTGGATAAAGGTTACTTGAGTTCCATTCCTTCTAATGGCCCTCAGAAAAAGAAAAAAAAAACCATGACTGTTGTATCAGAAAAAAGAGCTTCTGATAGTTCAAACAGGTTGATGCTTGGCTATGGTAATTACTCATTTGGTAATTGCATTTGCATGAAATGGGATAAACTGTACTGACACTTATTTGTAGTTAGAGCAAAAGTAAATAGATGTACATAATATATTTTTGAGGGAATAAAACGTCTCTTGTTTAAGGATGGAAGAAACTTGTAAATTAGACATGTCTAGCAATGTACAAAAGAGGAAAAAGAAGGATATCATCCCTCTTTTGTTGTTTTATTTGTTTTTGTTTGTTAGCAGGATTTTTGCATCTTCTAAATAATGTTTGGCAGGAGTTAAGTATTTCGGTGGAAGTATGGTGGTTGCTCCAAAGTGCGTGCACAACTTTCACAATTGATATTGTTAAGCCGATTAAACTACCTGAATATTTGTAACTAACTGAGCATGCGTTTCTTATGTGTGTATGATCAACATTCACTCATTTGTAAAATGCTAAAATATCATTTTAC

Coding sequences of Glyma02g15080

Limit To All Plant Sequences

>Glyma02g15080.1   sequence type=CDS   gene model=Glyma02g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTGGTGGTGGCTTCGCCGTCAGAGGCGGTAACATCTACTGGGGGAGAAAAGAGGAAACTGATTTCAGAGGAATCGTTGTAATCTTCGCCTGGGTTTCTGTTCCGCAGAACCTGTTACAAGAATTCGTTGATCTGTGTTCTTCTTTGAGGTGGAATTCCCTTGTTTGTTTTGCCCATTATCTCTCAGCTTTCCATGATGAAAGTGCCATGCCATTGGCATTTTGCGTTCTTGATGAACTTATTGAGGAGCTAAGAACTAGGTCATGTCCTGTTGTATTTGCTGCTTTTTCTGCTGGGTCAAAAGCATGTCTGTTCAGGGTATTTCAGCTTATTGATGGAAGATGTGAAACTCCGCTCAACTTGCCTAACTATCAATTACTTAGGAACTGTCTTTCTGGACACATATATGATTCTGGTCCAATAGATGTTACAAGTGATTTTGGCTTCCGCTTCACACTACACCCCTCCATTGTAAAAGTGCCTGGACCATCAAAACTTGTTTCTTGGGTAGCAAAATCTGTTACCTCTGGTTTGGATGCTTTGTACCTAACTAGATTTGAATCCCAAGCTGCTGAGCATTGGCAGGCTTTATATTCTTCTGTTAATTTTGGAGCTCCATTTCTCATTTTATGTTCTGAGAATGATGACCTTGTGCGATACCAAAGTATCTATGAATTTGCTCAACAACTACGCAATCTCAGTGGTGATGTCAACCTTGTAAATTTCAGTAGCTCCTCTCACCTTGGTCATTACAAACACCATCCAATTGAATATAGAGCTGCTGTGAGCCATTTATTAGAGAAGGCTTCTTCAATATATTCACAAAAAATGTTGCTTGAACGAGAAAGAACTGGTATGGATGGTACACAGGATGAGATATCTGAGTTAATCTGTGACCTGCAGAAGGTGGCAATCAATTCAAATAAGAGCCTTAGAAGAGTTGCAGTTGGGCCAACCGACCACTTCTTTTTGCCTAGTTCAGCAGGACATTACAGTGATAGAGAATCTGGTGCTCCGCAAGACGAACAAAAAGAAAAACCTGTTTTTGTACCTAGCTTCCCAAGCATCAGCGCTCATAGTGTCCTTGGCCAATTTCTTTTCGACGTTTGTGTTCCAAAGAATGTTGAGGGTTGGGATGTGAAATCTTCTGGGAATCTAAATGGGAGGTCATGTGCTTCAGCTCCAAGGCATTCACTATTCAGGGGTACTAAACGCATCGGTCGGTCCAAATTATGA

>Glyma02g15080.2   sequence type=CDS   gene model=Glyma02g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATTGGCATTTTGCGTTCTTGATGAACTTATTGAGGAGCTAAGAACTAGGTCATGTCCTGTTGTATTTGCTGCTTTTTCTGCTGGGTCAAAAGCATGTCTGTTCAGGGTATTTCAGCTTATTGATGGAAGATGTGAAACTCCGCTCAACTTGCCTAACTATCAATTACTTAGGAACTGTCTTTCTGGACACATATATGATTCTGGTCCAATAGATGTTACAAGTGATTTTGGCTTCCGCTTCACACTACACCCCTCCATTGTAAAAGTGCCTGGACCATCAAAACTTGTTTCTTGGGTAGCAAAATCTGTTACCTCTGGTTTGGATGCTTTGTACCTAACTAGATTTGAATCCCAAGCTGCTGAGCATTGGCAGGCTTTATATTCTTCTGTTAATTTTGGAGCTCCATTTCTCATTTTATGTTCTGAGAATGATGACCTTGTGCGATACCAAAGTATCTATGAATTTGCTCAACAACTACGCAATCTCAGTGGTGATGTCAACCTTGTAAATTTCAGTAGCTCCTCTCACCTTGGTCATTACAAACACCATCCAATTGAATATAGAGCTGCTGTGAGCCATTTATTAGAGAAGGCTTCTTCAATATATTCACAAAAAATGTTGCTTGAACGAGAAAGAACTGGTATGGATGGTACACAGGATGAGATATCTGAGTTAATCTGTGACCTGCAGAAGGTGGCAATCAATTCAAATAAGAGCCTTAGAAGAGTTGCAGTTGGGCCAACCGACCACTTCTTTTTGCCTAGTTCAGCAGGACATTACAGTGATAGAGAATCTGGTGCTCCGCAAGACGAACAAAAAGAAAAACCTGTTTTTGTACCTAGCTTCCCAAGCATCAGCGCTCATAGTGTCCTTGGCCAATTTCTTTTCGACGTTTGTGTTCCAAAGAATGTTGAGGGTTGGGATGTGAAATCTTCTGGGAATCTAAATGGGAGGTCATGTGCTTCAGCTCCAAGGCATTCACTATTCAGGGGTACTAAACGCATCGGTCGGTCCAAATTATGA

Predicted protein sequences of Glyma02g15080

Limit To All Plant Sequences

>Glyma02g15080.1   sequence type=predicted peptide   gene model=Glyma02g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGGGFAVRGGNIYWGRKEETDFRGIVVIFAWVSVPQNLLQEFVDLCSSLRWNSLVCFAHYLSAFHDESAMPLAFCVLDELIEELRTRSCPVVFAAFSAGSKACLFRVFQLIDGRCETPLNLPNYQLLRNCLSGHIYDSGPIDVTSDFGFRFTLHPSIVKVPGPSKLVSWVAKSVTSGLDALYLTRFESQAAEHWQALYSSVNFGAPFLILCSENDDLVRYQSIYEFAQQLRNLSGDVNLVNFSSSSHLGHYKHHPIEYRAAVSHLLEKASSIYSQKMLLERERTGMDGTQDEISELICDLQKVAINSNKSLRRVAVGPTDHFFLPSSAGHYSDRESGAPQDEQKEKPVFVPSFPSISAHSVLGQFLFDVCVPKNVEGWDVKSSGNLNGRSCASAPRHSLFRGTKRIGRSKL*

>Glyma02g15080.2   sequence type=predicted peptide   gene model=Glyma02g15080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLAFCVLDELIEELRTRSCPVVFAAFSAGSKACLFRVFQLIDGRCETPLNLPNYQLLRNCLSGHIYDSGPIDVTSDFGFRFTLHPSIVKVPGPSKLVSWVAKSVTSGLDALYLTRFESQAAEHWQALYSSVNFGAPFLILCSENDDLVRYQSIYEFAQQLRNLSGDVNLVNFSSSSHLGHYKHHPIEYRAAVSHLLEKASSIYSQKMLLERERTGMDGTQDEISELICDLQKVAINSNKSLRRVAVGPTDHFFLPSSAGHYSDRESGAPQDEQKEKPVFVPSFPSISAHSVLGQFLFDVCVPKNVEGWDVKSSGNLNGRSCASAPRHSLFRGTKRIGRSKL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain