SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49670 | AT | Annotation by Michelle Graham. TAIR10: ARP protein (REF) | chr1:18381591-18386021 REVERSE LENGTH=629 | SoyBase | E_val: 0 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| KOG4169 | KOG | 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases | JGI | ISS | |
| PTHR11695 | Panther | ALCOHOL DEHYDROGENASE RELATED | JGI | ISS | |
| PTHR11695:SF236 | Panther | gb def: hypothetical protein [dictyostelium discoideum] | JGI | ISS | |
| PF00106 | PFAM | short chain dehydrogenase | JGI | ISS | |
| PF00107 | PFAM | Zinc-binding dehydrogenase | JGI | ISS | |
| PF08240 | PFAM | Alcohol dehydrogenase GroES-like domain | JGI | ISS | |
| UniRef100_G7JLA7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 15-hydroxyprostaglandin dehydrogenase n=3 Tax=Medicago truncatula RepID=G7JLA7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JEV3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEV3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g15070 not represented in the dataset |
Glyma02g15070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g33380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g133500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g15070.1 sequence type=CDS gene model=Glyma02g15070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATCAAGCCCGGTTTGTCAGCACTCGTTACCGGTGGTGCCTCTGGAATCGGCAAAGGTCTTGCACTAGCTCTTGCAGAGAAGGGTGTATTTATCACGATCGTGGATTTCTCTGAAGAAAAGGGAAGACAAGCTGCAATCCTCGTCGAGAAAATTAACTCCAATTTTCATTCTAAGTTAGGATTTCCGTCTGCCATATTTGTGAAATGTGATGTGAGTAATGCAAGGGATCTAGCTGCTGCATTTGAAAAGCATTTTTTGACATATGGAGGACTAGACATTTGTATTAACAGTGCGGGGATTAGTAGTTCTGTACCATTCCGTGATGATCAAACGGATGGCACCCGAACATGGAGATACACTGTTAATGTGAATTTCACTGCTGTTATTGATTCCACTCGCCTTGCGATTAAAATCATGGAAGCTTCCAAAAGGCCTGGTGTGATTATCAACTTGGGTTCTGCTTCTGGTCTTTATCCAATGGTGGCTGACCCAATTTACAGTGGCTCTAAAGGTGGTGTTGTTATGTTTTCTAGATCACTTCGTCTATACAAACGTCAAGGAATTCGAGTCAATGTGCTTTGCCCTGAGTTTGTTGAAACTGAGATGGGAAATAAGATTGATCCCAAGATCATCAATTTGAGTGGGGGCTTTGTACCTATGGAAATGGTGGTGAAAGGTGCTTTTGAGCTCATTATGGATGAAAGTAAAGCTGGTCATTGTCTGTGGATTACAAATCGTCAGGGCATGGAGTACTGGCCCTCTCCATCTGAAGAAGCAAAGTACTTGATACGTTCCTCTCGTTTCAGGAGAAGATCCGATTTCAAAGCTCCATTAATTAAAATTCCTGAGAGTTTTGAGAAAATAGTTGTTCACACCTTGACTCACAACTTTCGGAATGCTACCAGCATAGTGAGAACACCTCTGAGATTACCTGTCAAACCAAAACATGTTCTTGTTAAGATAATTTTTGCTGGTGTCAATGCTAGTGATGTAAATTTTAGCTCAGGCCGCTATTTTGGTGGCAACAACAATGATGTTGTTTCTCGTCTTCCATTTGATGCAGGATTTGAGGCTGTAGGGATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAGTTGGTATGCCTTGTGCATTCATGACTTTTGGAGGCTACGCTGAATTCTTAATGATTCCTTCAAAACATGCTCTTCCGGTGCCTAGACCAGATCCTGAAGTTGTTGCCATGCTTACATCGGGATTGACTGCCTCAATTGCTCTAGAAAAGGCAGGACAGATGGAATCTGGAAAAGTGGTCCTTGTTACTGCTGCGGCAGGAGGAACGGGGCAATTTGCTGTTCAGCTAGCAAAATTAGCAGGAAATACAGTGGTTGCAACTTGTGGAGGTGGGGCAAAAGCCAAGCTTCTGAAAGATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACTGTTCTAAGGGAAGAGTTCCCCAAAGGTATTGACATCATCTATGAGTCTGTTGGCGGTGACATGTTAAACTTGTGCTTGAATGCTTTGGCTGTTCATGGACGACTCATTGTTATTGGCATGATTTCTCAGTATCAAGGAGAGAAGGGTTGGACGCCATCAAAATACCCTGGACTATTGGAGAAGCTCTTAGCAAAGAGCCAAACAGTGTCTGGCTTTTTCCTGGTGCAATATGGTCACTTGTGGCAAGAACATCTTGACAGACTATTTAATCTTTACTCTTCGGGAAAGCTAAAGGTTGCTATTGATCCAAAGAAATTTATAGGCCTGCATTCTGCTGCAGACGCTGTTGAATATCTCCATTCAGGCAAAAGTGTTGGGAAGGTTGTCGTCTCCGTGGACCCAAGCTTCCTTCCTCAAGTGGCCAAATTGTGA
>Glyma02g15070.1 sequence type=predicted peptide gene model=Glyma02g15070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEIKPGLSALVTGGASGIGKGLALALAEKGVFITIVDFSEEKGRQAAILVEKINSNFHSKLGFPSAIFVKCDVSNARDLAAAFEKHFLTYGGLDICINSAGISSSVPFRDDQTDGTRTWRYTVNVNFTAVIDSTRLAIKIMEASKRPGVIINLGSASGLYPMVADPIYSGSKGGVVMFSRSLRLYKRQGIRVNVLCPEFVETEMGNKIDPKIINLSGGFVPMEMVVKGAFELIMDESKAGHCLWITNRQGMEYWPSPSEEAKYLIRSSRFRRRSDFKAPLIKIPESFEKIVVHTLTHNFRNATSIVRTPLRLPVKPKHVLVKIIFAGVNASDVNFSSGRYFGGNNNDVVSRLPFDAGFEAVGIIAAVGDSVTDLKVGMPCAFMTFGGYAEFLMIPSKHALPVPRPDPEVVAMLTSGLTASIALEKAGQMESGKVVLVTAAAGGTGQFAVQLAKLAGNTVVATCGGGAKAKLLKDLGVNRVIDYHSEDVKTVLREEFPKGIDIIYESVGGDMLNLCLNALAVHGRLIVIGMISQYQGEKGWTPSKYPGLLEKLLAKSQTVSGFFLVQYGHLWQEHLDRLFNLYSSGKLKVAIDPKKFIGLHSAADAVEYLHSGKSVGKVVVSVDPSFLPQVAKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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