Glyma02g15030 - SoyBase

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Report for Sequence Feature Glyma02g15030

Feature Type:	gene_model
Chromosome:	Gm02
Start:	13578600
stop:	13580204
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g15030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34419	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19200.1). \| chr4:16456597-16456986 FORWARD LENGTH=129	SoyBase	E_val: 6.00E-22	ISS
UniRef100_I1JEV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEV0_SOYBN	SoyBase	E_val: 1.00E-94	ISS
UniRef100_Q9LJK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB36719.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LJK8_ARATH	SoyBase	E_val: 4.00E-11	ISS

Expression Patterns of Glyma02g15030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15030

Paralog	Evidence	Comments
Glyma07g33430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g133300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g15030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g15030

Limit To All Plant Sequences

>Glyma02g15030.1   sequence type=CDS   gene model=Glyma02g15030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCTAGAATCTCCTTCTCCTATGATTTCGTGGTTTCCCAACAAGCAATCAAGCATGAAAACATATACAGAGAAGATCCTGTCTCTTCGGATTTCGAATTCTCTGTCAAGAACAATTCTATGATATCAGCAGATGAAGTCTTCTTTCAGGGTATGTTGTTGCCTCTCAAGAGTGATTGCTCCAATAAGAAGGTGACTTTGAGGGATGAGTTGCTTGTGAATGATGATCACTATGAAGAGGAGTTACCAAGATTGCCAAAGAGTTCAAGCCGGTGGAAGGAGCGATTAGGCCTCAGGAAAGGTTCATCTAAGAAAGATAAGAATAAGAACAATGAGGGGTTTCAGCAGACTAGAGTTGCTGGTGAAAAAGGGTTTAGCTCAGGACAAGGAGACAAGACTGTTAGCTAA

Predicted protein sequences of Glyma02g15030

Limit To All Plant Sequences

>Glyma02g15030.1   sequence type=predicted peptide   gene model=Glyma02g15030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPRISFSYDFVVSQQAIKHENIYREDPVSSDFEFSVKNNSMISADEVFFQGMLLPLKSDCSNKKVTLRDELLVNDDHYEEELPRLPKSSSRWKERLGLRKGSSKKDKNKNNEGFQQTRVAGEKGFSSGQGDKTVS*

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