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Report for Sequence Feature Glyma02g15020

Feature Type:gene_model
Chromosome:Gm02
Start:13569954
stop:13572413
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g15020
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14870AT Annotation by Michelle Graham. TAIR10: PLANT CADMIUM RESISTANCE 2 | chr1:5128591-5129458 REVERSE LENGTH=152 SoyBaseE_val: 3.00E-51ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR15907Panther FAMILY NOT NAMED JGI ISS
PTHR15907:SF17Panther UNKNOWN PROTEIN JGI ISS
PF04749PFAM PLAC8 family JGI ISS
UniRef100_C6T4S5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4S5_SOYBN SoyBaseE_val: 8.00E-141ISS
UniRef100_G7JLA3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Placenta-specific gene 8 protein n=1 Tax=Medicago truncatula RepID=G7JLA3_MEDTR SoyBaseE_val: 3.00E-88ISS

Expression Patterns of Glyma02g15020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15020
ParalogEvidenceComments
Glyma07g33441 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15020 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g133200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g15020
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g15020
>Glyma02g15020.1   sequence type=CDS   gene model=Glyma02g15020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCCTGCAGTAGATGAACATGAAGAGGTATACGCAGCTCATCATAGACATCCAGGTTATGTTCTACCAGTTGTGGTGCCTCCAAATTATGGCACTCCACAAATTCCATCCTATGCTCCTCCATACATCAGCACCAGTGTTAGTGTAAGGGGCCCTGTGATCAGGACAAATCGATGGTCAACCAATTTGTGCCATTGTACTGAGGATCCTGGAAACTGTTTGGTCACTTGCTTCTGCCCCTGTGTTACATTTGGATTGATAGCAGAGATAGTAGATAAAGGCAATACAACTTGCACTTATGCTGGGGCTATTTATGGGACGCTACTGGCTCTTAGCGGGCTTTCATGCTTGTATTCTTGCTATTATAGGTCCAAACTGAGGGCACAATATGACTTACCAGAGGCTCCATGTATGGATTGTTTAGTTCATTTCTGCTGTGAAACATGTGCTCTATGTCAGGAGTATAGAGAGCTTAAAAACCGTGGATTTGACTTGAGCATAGGGTGGGAAGCCAACATGGAAAGACAAAGACAAGGAGCTATAGTATCACCAGTAATGTCACAATCTATGACAAGATGA
Predicted protein sequences of Glyma02g15020
>Glyma02g15020.1   sequence type=predicted peptide   gene model=Glyma02g15020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYPAVDEHEEVYAAHHRHPGYVLPVVVPPNYGTPQIPSYAPPYISTSVSVRGPVIRTNRWSTNLCHCTEDPGNCLVTCFCPCVTFGLIAEIVDKGNTTCTYAGAIYGTLLALSGLSCLYSCYYRSKLRAQYDLPEAPCMDCLVHFCCETCALCQEYRELKNRGFDLSIGWEANMERQRQGAIVSPVMSQSMTR*






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