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Report for Sequence Feature Glyma02g15000

Feature Type:gene_model
Chromosome:Gm02
Start:13564591
stop:13565148
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g15000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15680AT Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr2:6831024-6831587 FORWARD LENGTH=187 SoyBaseE_val: 4.00E-73ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF39Panther EF-HAND CALCIUM BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_C6SWC0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWC0_SOYBN SoyBaseE_val: 4.00E-133ISS
UniRef100_G7JL97UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-like protein n=2 Tax=Medicago truncatula RepID=G7JL97_MEDTR SoyBaseE_val: 7.00E-98ISS

Expression Patterns of Glyma02g15000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g15000
ParalogEvidenceComments
Glyma07g33460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g15000 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g133000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g15000
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g15000
>Glyma02g15000.1   sequence type=CDS   gene model=Glyma02g15000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAATACAAGTTTGCTTGATTTCCAATACAGCCTCTCAAGGAAAAAATACTTGAGGAAGCCATCACGTCTGTTCTCATGGGACCGGCAGAACTCGGGGCCGAAGAATGTATTTCCTCAGCCTAAGGCTGATGAGATGAAGCAGGTGTTTGACAAGTTTGATTCCAATAAAGATGGGAAAATTTCTCAACAGGAGTACAAAGCCACCATGAAGGCTCTAGGCATGGGGGACTCGGTTCATGAAGTGCCGAATATTTTCAGGGTGGTTGATTTGAATGGAGATGGATTCATCAACTTCAAGGAATTTATGGAAGCTCAGAGCAAGGGTGGCGGGGTTAGGATGATGGATATACAGAGTGCATTTCGGACATTTGATAAGAATGGCGACGGTAGAATAAGTGCTGAAGAAGTTAAAGAAATGCTGGGAAAGCTGGGAGAAAGGTGCAGCATTGAGGACAGTCGGCGAATGGTGAGAGCTGTAGACACTGATGGAGACGGCATGGTTGACATGGACGAGTTCACAACCATGATGACACAGTCCCTGAGGCATGTTTGA
Predicted protein sequences of Glyma02g15000
>Glyma02g15000.1   sequence type=predicted peptide   gene model=Glyma02g15000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNTSLLDFQYSLSRKKYLRKPSRLFSWDRQNSGPKNVFPQPKADEMKQVFDKFDSNKDGKISQQEYKATMKALGMGDSVHEVPNIFRVVDLNGDGFINFKEFMEAQSKGGGVRMMDIQSAFRTFDKNGDGRISAEEVKEMLGKLGERCSIEDSRRMVRAVDTDGDGMVDMDEFTTMMTQSLRHV*






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