Glyma02g14860 - SoyBase

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Report for Sequence Feature Glyma02g14860

Feature Type:	gene_model
Chromosome:	Gm02
Start:	13371729
stop:	13377777
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g14860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34030	AT	Annotation by Michelle Graham. TAIR10: 3-methylcrotonyl-CoA carboxylase \| chr4:16301298-16303949 FORWARD LENGTH=587	SoyBase	E_val: 0	ISS
GO:0006552	GO-bp	Annotation by Michelle Graham. GO Biological Process: leucine catabolic process	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005759	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix	SoyBase	N/A	ISS
GO:0004075	GO-mf	Annotation by Michelle Graham. GO Molecular Function: biotin carboxylase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ligase activity	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG0540	KOG	3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta	JGI		ISS
PTHR22855	Panther	ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED	JGI		ISS
PTHR22855:SF13	Panther	ACETYL-COA CARBOXYLASE CARBOXYLTRANSFERASE-RELATED	JGI		ISS
PF01039	PFAM	Carboxyl transferase domain	JGI		ISS
UniRef100_G7JL66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-methylcrotonyl-CoA carboxylase n=1 Tax=Medicago truncatula RepID=G7JL66_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JET4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JET4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g14860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g14860

Paralog	Evidence	Comments
Glyma07g33620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g14860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g131500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g14860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g14860

Limit To All Plant Sequences

>Glyma02g14860.2   sequence type=transcript   gene model=Glyma02g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATTATCCGATGGAGACATCAAATGTATTTATTTTGCAGTAACGGAAGAGAGTGGAACTGTATCCCCGTCATCGGATAAACACAATAGCTGTAGATAGAGAAGAGTGCCATTATTGATTCGCAGAAGAAGATAAGCGATGTTTGGGTTAATCGGAAGAAAGGCCTCTTTGTTGGGAGGATCAGGAAGAAGAAGAAGATGGTTGAGCTTCGCAGCAGCAGCAGCAGCAACAACCACTACCAATGGTGGGGCCATGGAGGAGTTGCTTTCACAGCTCCAATCTCATGTCCAGAAGGCTCTTGCTGGTGGAGGACCCGAGGCAGTGAAGAGGAACACGAGTAGGAACAAGTTTCTGCCCCGTGAAAGAATCGATCGCCTCCTTGATCCCGGTTCTTCCTTCCTCGAGCTTTCACAGGACATTACTTGTATGAAGAACCTTTGCCTTCTGGAGGGGTTGTTACTGGGATAGGTCCTGTGCATGGGAGACTGTGTATGTTTGTGGCGAATGATCCCACTGTTAAGGGAGGTACTTATTATCCCATTACTGTTAAGAAGCACCTCAGGGCACAGGAGATTGCTGCTCAGTGCAAATTGCCCTGCATATATCTTGTCGACAGTGGAGGAGCTTTTCTTCCCAAGCAAGCCGAAGTGTTTCCGGACAGAGAGAACTTTGGCAGAATATTCTACAATCAGGCTGTAATGTCTGCTCAAGGAATTCCTCAAATTGCATTGGTGTTGGGGTCTTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGGCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTGCACTGCAAGACATCAGGGGTTTCTGATTATTTTGCTCAAGATGAACTCCATGCACTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATATGGCTGGGAAAGATGTCTTGGCAAATGGATTGCAAAATATAAATTATGAATATAAAGAGCCATTGTATGATGTCAATGAACTTCGTTCTATTGCCCCCACTGATCTTAAGCAACAGTTTGATATTCGATCAGTTATTGATCGCATTGTTGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTACACTTGTGACAGGATTTGCTAGAATTTTTGGACAGCCTGTTGGAATTATTGGAAACAATGGGATTTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAGGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTAATGCTAGAATTTCTGTGATGGGTGGTGCTCAGGCTGCTGGTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGTGGAGCAAGGAAGAAGAGGATAAGTTTAAAGGGAAAGTAGTGGAGGCTTATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCTAGGCTTTGGGATGATGGAATCATTGATCCAGCGGATACAAGAAAAGTCATTGGTCTATCCATCTCTGCCTCCTTGAACCGTGACATTCAAAACACAAAATATGGTGTATTTAGAATGTAAATTTCAAAATTTATTCTGCCCTAAAATATGTGGTTATCATTCAGCAATGGTGTTCTCAAGATGGTCTCAACATCCTCCACTTCAAAAATTTTCTCAAGGAGCATGTAGTTCCAACACAAACCCTCTTTATCCATCAGAACTCCCACTTCCAAATCCTTCAAGCCATTTACAAGTGGTGTTCAAATCAATGTATGACCCGTGTGCCTTAACCATGGTTCTCCCCAAACATTAACATTCTCCCCATTTTCTAGCTTCCACCTCACACCTTCCTTAAACATCATTTTGGAAAACAATATGCTTCGCCACTAAGAATATGATGGTTATTACCTAAGCCAACACCCATAAAATCCCTTTTAGGGAAGTATTTGGCTTTGAATACTCTTGTTGACAAAGCATTGGGTTTTGATATAAATCTCCACCCTTGTTTTCCTATCATGGTCAAGTTGAAAGCATAGATATTTCGGAAGCCTAAGCTCCCCCAAGCTCCATTGAGACACATAATTTTTTTCCCAAGCTAGCCAATTCATTCATTTTGATTCCCTATTACTTGACCCCCCACCAATATGAGTTATTTTGGACAAGTGACCTCAATAACTTAAGGGGGGGAGGGGTGAATTAAGTTAAAAAATTTCTCGTTTAATTGACTTCTAAATCTCTTTTTAAATCTATATGTTAAGAATATTAAAAATAAAGATAAAAATTATATCAATAGAATACTTCAAGTGTACAAGATAAATAAAATATGCAAGATAAAGTAATCAAGATAGGGAAGAGAGAAATACAAACTCAGTTTATCCTAGTTCGGCCACTTCCTGGGCCTACGTCCAGTTCTCAAGCAATCCACTTGAGATTTTCACTAATTTTGTAAAAATACTTTTTACAACTTTTGAACATTTGAGAGATCCCTTTCCCTTGTGTTCAGGAAACTCATAATTCAAGAGACAAACAATCTCTTGATCTCAATAAGTTTTTAAATAAAGTACAAATGTTTTCTCTCTTTTAGAGAAAAAGATACAAGATGAAGTTCTTAGAAGAATCCTTAATTGATTTGCAAGTGTTTGATCAATGATTTATTTTTTAGAGATAAGACAATAAGGTTCTGAAAAACTCTTTTAAAAACTTTCGTAGATAAGTCACATATTTATAGGCCCTTGGTGATTTTTCAAAAACTTATGAAGGGATGTGACTTTTCAGAATAATTTTTAAAATTTTCTCACTGGTAATCGATTACAACTCTTTGGTAATCGATCACACACTTATGTAATGAGGAGTCATGACTTTTCAATTTGAATTTTTGTAGTTCCGTTACTAGTAATTGATTACAGACAAGTGGTAATTGATTACAACTTTCAAATTTCAAATTTTAAACTTTCTAAAAAAGCTTTTTAAAATAATTTTTCTTCTGGTAATCAATTACAATGCCTGATAATCGATTACCAGTGGA

Coding sequences of Glyma02g14860

Limit To All Plant Sequences

>Glyma02g14860.1   sequence type=CDS   gene model=Glyma02g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGGTTAATCGGAAGAAAGGCCTCTTTGTTGGGAGGATCAGGAAGAAGAAGAAGATGGTTGAGCTTCGCAGCAGCAGCAGCAGCAACAACCACTACCAATGGTGGGGCCATGGAGGAGTTGCTTTCACAGCTCCAATCTCATGTCCAGAAGGCTCTTGCTGGTGGAGGACCCGAGGCAGTGAAGAGGAACACGAGTAGGAACAAGTTTCTGCCCCGTGAAAGAATCGATCGCCTCCTTGATCCCGGTTCTTCCTTCCTCGAGCTTTCACAGCTTGCAGGACATTACTTGTATGAAGAACCTTTGCCTTCTGGAGGGGTTGTTACTGGGATAGGTCCTGTGCATGGGAGACTGTGTATGTTTGTGGCGAATGATCCCACTGTTAAGGGAGGTACTTATTATCCCATTACTGTTAAGAAGCACCTCAGGGCACAGGAGATTGCTGCTCAGTGCAAATTGCCCTGCATATATCTTGTCGACAGTGGAGGAGCTTTTCTTCCCAAGCAAGCCGAAGTGTTTCCGGACAGAGAGAACTTTGGCAGAATATTCTACAATCAGGCTGTAATGTCTGCTCAAGGAATTCCTCAAATTGCATTGGTGTTGGGGTCTTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGGCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTGCACTGCAAGACATCAGGGGTTTCTGATTATTTTGCTCAAGATGAACTCCATGCACTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATATGGCTGGGAAAGATGTCTTGGCAAATGGATTGCAAAATATAAATTATGAATATAAAGAGCCATTGTATGATGTCAATGAACTTCGTTCTATTGCCCCCACTGATCTTAAGCAACAGTTTGATATTCGATCAGTTATTGATCGCATTGTTGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTACACTTGTGACAGGATTTGCTAGAATTTTTGGACAGCCTGTTGGAATTATTGGAAACAATGGGATTTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAGGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTAATGCTAGAATTTCTGTGATGGGTGGTGCTCAGGCTGCTGGTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGTGGAGCAAGGAAGAAGAGGATAAGTTTAAAGGGAAAGTAGTGGAGGCTTATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCTAGGCTTTGGGATGATGGAATCATTGATCCAGCGGATACAAGAAAAGTCATTGGTCTATCCATCTCTGCCTCCTTGAACCGTGACATTCAAAACACAAAATATGGTGTATTTAGAATGTAA

>Glyma02g14860.2   sequence type=CDS   gene model=Glyma02g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTGGCGAATGATCCCACTGTTAAGGGAGGTACTTATTATCCCATTACTGTTAAGAAGCACCTCAGGGCACAGGAGATTGCTGCTCAGTGCAAATTGCCCTGCATATATCTTGTCGACAGTGGAGGAGCTTTTCTTCCCAAGCAAGCCGAAGTGTTTCCGGACAGAGAGAACTTTGGCAGAATATTCTACAATCAGGCTGTAATGTCTGCTCAAGGAATTCCTCAAATTGCATTGGTGTTGGGGTCTTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGGCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTGCACTGCAAGACATCAGGGGTTTCTGATTATTTTGCTCAAGATGAACTCCATGCACTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATATGGCTGGGAAAGATGTCTTGGCAAATGGATTGCAAAATATAAATTATGAATATAAAGAGCCATTGTATGATGTCAATGAACTTCGTTCTATTGCCCCCACTGATCTTAAGCAACAGTTTGATATTCGATCAGTTATTGATCGCATTGTTGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTACACTTGTGACAGGATTTGCTAGAATTTTTGGACAGCCTGTTGGAATTATTGGAAACAATGGGATTTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAGGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTAATGCTAGAATTTCTGTGATGGGTGGTGCTCAGGCTGCTGGTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGTGGAGCAAGGAAGAAGAGGATAAGTTTAAAGGGAAAGTAGTGGAGGCTTATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCTAGGCTTTGGGATGATGGAATCATTGATCCAGCGGATACAAGAAAAGTCATTGGTCTATCCATCTCTGCCTCCTTGAACCGTGACATTCAAAACACAAAATATGGTGTATTTAGAATGTAA

Predicted protein sequences of Glyma02g14860

Limit To All Plant Sequences

>Glyma02g14860.1   sequence type=predicted peptide   gene model=Glyma02g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGLIGRKASLLGGSGRRRRWLSFAAAAAATTTTNGGAMEELLSQLQSHVQKALAGGGPEAVKRNTSRNKFLPRERIDRLLDPGSSFLELSQLAGHYLYEEPLPSGGVVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCIYLVDSGGAFLPKQAEVFPDRENFGRIFYNQAVMSAQGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGATVHCKTSGVSDYFAQDELHALALGRNIIKNLHMAGKDVLANGLQNINYEYKEPLYDVNELRSIAPTDLKQQFDIRSVIDRIVDGSEFDEFKKLYGTTLVTGFARIFGQPVGIIGNNGILFNESALKGAHFIELCTQRNIPLVFLQNITGFMVGSRSEANGIAKSGAKMVMAVSCAKVPKVTIMVGGSFGAGNYAMCGRAYSPNFLFLWPNARISVMGGAQAAGVLAQIEKGNKKRQGIQWSKEEEDKFKGKVVEAYEREASPYYSTARLWDDGIIDPADTRKVIGLSISASLNRDIQNTKYGVFRM*

>Glyma02g14860.2   sequence type=predicted peptide   gene model=Glyma02g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCIYLVDSGGAFLPKQAEVFPDRENFGRIFYNQAVMSAQGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGATVHCKTSGVSDYFAQDELHALALGRNIIKNLHMAGKDVLANGLQNINYEYKEPLYDVNELRSIAPTDLKQQFDIRSVIDRIVDGSEFDEFKKLYGTTLVTGFARIFGQPVGIIGNNGILFNESALKGAHFIELCTQRNIPLVFLQNITGFMVGSRSEANGIAKSGAKMVMAVSCAKVPKVTIMVGGSFGAGNYAMCGRAYSPNFLFLWPNARISVMGGAQAAGVLAQIEKGNKKRQGIQWSKEEEDKFKGKVVEAYEREASPYYSTARLWDDGIIDPADTRKVIGLSISASLNRDIQNTKYGVFRM*

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