Glyma02g14521 - SoyBase

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Report for Sequence Feature Glyma02g14521

Feature Type:	gene_model
Chromosome:	Gm02
Start:	13115167
stop:	13128951
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g14521

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68750	AT	Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase 4 \| chr1:25822942-25828104 REVERSE LENGTH=1032	SoyBase	E_val: 0	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0015977	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbon fixation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008964	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxylase activity	SoyBase	N/A	ISS
UniRef100_I1JER9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase 1 n=1 Tax=Glycine max RepID=I1JER9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337A52	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337A52 related cluster n=1 Tax=unknown RepID=UPI0002337A52	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g14521

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g14521 not represented in the dataset	Glyma02g14521 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g14521

Paralog	Evidence	Comments
Glyma01g22840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g14521 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g14521

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g14521

Limit To All Plant Sequences

>Glyma02g14521.2   sequence type=transcript   gene model=Glyma02g14521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCCTTCCTCCGCGCCAGTTAGTTATTGTTTGCCACCTTATTATATGCCACCACTTTCTCCTCTACTCACTCCTTCAACCACACACATATTAACCCTCTCTCTCACTCTCTTTCTTCTTCTTCTGTATTCGTTTTTTTTTGTGTGTGTTAAGTTTTTTGTTGTGTGTGTGGGAACATTACAATAACGGACATCACTGACGGAGGAAATCTCCTTCCAGGGCTTCGAAGATGACTGTAAATTGCTAGGGAACCTTCTCAACGACATTCTCCAGAGGGAGGCTGGCTCCACCTTCGTTGACAAGCTCGAAAAAATTCGAGTCCTTTCACAGAGTGCTTGTAATATGAGACAAGCGGGAATGGAGGACTTGGCTGAGATGCTAGAGAAGCAATTGGCTTCAGAGTTATCCAAGATGACGCTGGAAGAAGCTTTGCCCCTTGCTCGTGCCTTTAGCCATCATCTTACTTTGATGGGTATAGCTGAAACCCACCATAGGGTTCGTAAAGGAGGAAATATGGTTCTTGCTGCAAAATCTTGTGATGATATCTTTAACAACCTGTTGCAAGATGGGGTTTCTCCAGATGAGCTTTATAACACAGTGTTCAAGCAGGAGGTTGAAATTGTTCTCACTGCTCATCCCACTCAAATTAACCGTCGTACCTTGCAATACAAACACCTTAAAATTGCTCATCTTTTGGATTATAATGATCGACCTGATCTTAGCCCTGAAGATCGAGATATGTTGATTGAAGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGGCGTTCAAAACCCACACCAGTAGATGAAGCTAGGGCGGGATTGAATATTGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCATTATTTACGTCGAGTTAGCAGCGCTTTAAAGAAGCACACAGGAAAACCACTTCCATTGACTTGCACTCCAATAAAATTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTGACAGCAAAGGTCACAAAAGATGTTTCACTTCTGTCAAGATGGATGGCGATTGACCTCTACATTCGGGAAGTGGATGGCCTAAGATTTGAGCTATCCATGAACCAGTGCAGTGATAAGTTGTCAGAACTGGCACATGAAATTCTAAAAGAAGGTAATGATGAGGAGGATCACCATGAGCACTGGAATGGATCTATGAGTAGAAGTCAATCAAAACATCCTAATCAACAAGCTTCACCACTTCCAACTAAACTTCCAGCTGGAGCTCATTTACCCTCTTGTGCTCGGCCTGAGGGTGGATCTGAGTATCCCAGACACGTGCCAGGAGCTGATCACAAGCAACCCAATCACAAGGGTGGTGAGACTTCAAGTTCAACTGAGAGCAATGGTGGCAGTCAAAATGTCCGTTCGTCAATACCAATTTCACCAAATTCCAGTTCTTCATTAGTTTCAATGACACGCTCGCCTTCCTTCAACTCTAGTCAACTTGTTGCTCAGAGGAAACTGTTTGCAGAATCCCAAATAGGAAGGACCAGTTTTAAGAGGCTTTTGGAGCCAAAGGTCCCTCAGGTTCCTGGAATTGCTCCTTATAGAGTTGTCCTTGGATATATAAAAGATAAGCTTCAGAGAACTCGTAGACGGTTGGAGCTTCTTATCGAGGATGGTCCATCTGAACATGATCCTATGGATTATTATGAAACAACAGATCAGCTTTTAGAACCTCTTCTCCTTTGTTATGAATCTTTGCAATTATGTGGATCTGGGGTGCTAGCTGATGGTCGACTAGCTGATCTGATTCGAAGAGTTGCTACTTTTGGCATGGTGTTAATGAAGCTTGACTTGCGTCAGGAATCCGGCAGACATGCTGAAACAATTGATGCAATTACGAGGTATTTGGATATGGGTACGTACAGTGAATGGGATGAAGAAAAGAAACTGGACTTCTTAACTAGAGAGTTGAAAGGGAAGAGACCACTGGTTCCTCCCAGTATAGAGGCCACAATGAATGACACCCTGCAATGCACTGTCCACTTTTCAGGCCACAACGAATGACACTTTGCAACCCTTTCTCCAGAAGTTCGTCGCTATGTTCTTCGATGACATTCTGGTCTATACTACCAGGTCTAGTACTGAAGCAGAATATCGCAACATTGCTCAAACTTTCACTGAATTGACTTGGATTTATACTCTGCTTACAAAGTTATAAGTTTCTTTCACTACATCAGTAATTTTTTGTGATAATCAGCG

Coding sequences of Glyma02g14521

Limit To All Plant Sequences

>Glyma02g14521.1   sequence type=CDS   gene model=Glyma02g14521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAAGCGGGAATGGAGGACTTGGCTGAGATGCTAGAGAAGCAATTGGCTTCAGAGTTATCCAAGATGACGCTGGAAGAAGCTTTGCCCCTTGCTCGTGCCTTTAGCCATCATCTTACTTTGATGGGTATAGCTGAAACCCACCATAGGGTTCGTAAAGGAGGAAATATGGTTCTTGCTGCAAAATCTTGTGATGATATCTTTAACAACCTGTTGCAAGATGGGGTTTCTCCAGATGAGCTTTATAACACAGTGTTCAAGCAGGAGGTTGAAATTGTTCTCACTGCTCATCCCACTCAAATTAACCGTCGTACCTTGCAATACAAACACCTTAAAATTGCTCATCTTTTGGATTATAATGATCGACCTGATCTTAGCCCTGAAGATCGAGATATGTTGATTGAAGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGGCGTTCAAAACCCACACCAGTAGATGAAGCTAGGGCGGGATTGAATATTGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCATTATTTACGTCGAGTTAGCAGCGCTTTAAAGAAGCACACAGGAAAACCACTTCCATTGACTTGCACTCCAATAAAATTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTGACAGCAAAGGTCACAAAAGATGTTTCACTTCTGTCAAGATGGATGGCGATTGACCTCTACATTCGGGAAGTGGATGGCCTAAGATTTGAGCTATCCATGAACCAGTGCAGTGATAAGTTGTCAGAACTGGCACATGAAATTCTAAAAGAAGGTAATGATGAGGAGGATCACCATGAGCACTGGAATGGATCTATGAGTAGAAGTCAATCAAAACATCCTAATCAACAAGCTTCACCACTTCCAACTAAACTTCCAGCTGGAGCTCATTTACCCTCTTGTGCTCGGCCTGAAGAGGGTGGATCTGAGTATCCCAGACACGTGCCAGGAGCTGATCACAAGCAACCCAATCACAAGGGTGGTGAGACTTCAAGTTCAACTGAGAGCAATGGTGGCAGTCAAAATGTCCGTTCGTCAATACCAATTTCACCAAATTCCAGTTCTTCATTAGTTTCAATGACACGCTCGCCTTCCTTCAACTCTAGTCAACTTGTTGCTCAGAGGAAACTGTTTGCAGAATCCCAAATAGGAAGGACCAGTTTTAAGAGGCTTTTGGAGCCAAAGGTCCCTCAGGTTCCTGGAATTGCTCCTTATAGAGTTGTCCTTGGATATATAAAAGATAAGCTTCAGAGAACTCGTAGACGGTTGGAGCTTCTTATCGAGGATGGTCCATCTGAACATGATCCTATGGATTATTATGAAACAACAGATCAGCTTTTAGAACCTCTTCTCCTTTGTTATGAATCTTTGCAATTATGTGGATCTGGGGTGCTAGCTGATGGTCGACTAGCTGATCTGATTCGAAGAGTTGCTACTTTTGGCATGGTGTTAATGAAGCTTGACTTGCGTCAGGAATCCGGCAGACATGCTGAAACAATTGATGCAATTACGAGGTATTTGGATATGGGTACGTACAGTGAATGGGATGAAGAAAAGAAACTGGACTTCTTAACTAGAGAGTTGAAAGGGAAGAGACCACTGGTTCCTCCCAGTATAGAGGCCACAATGAATGACACCCTGCAATGCACTGTCCACTTTTCAGGCCACAACGAATGA

>Glyma02g14521.2   sequence type=CDS   gene model=Glyma02g14521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAAGCGGGAATGGAGGACTTGGCTGAGATGCTAGAGAAGCAATTGGCTTCAGAGTTATCCAAGATGACGCTGGAAGAAGCTTTGCCCCTTGCTCGTGCCTTTAGCCATCATCTTACTTTGATGGGTATAGCTGAAACCCACCATAGGGTTCGTAAAGGAGGAAATATGGTTCTTGCTGCAAAATCTTGTGATGATATCTTTAACAACCTGTTGCAAGATGGGGTTTCTCCAGATGAGCTTTATAACACAGTGTTCAAGCAGGAGGTTGAAATTGTTCTCACTGCTCATCCCACTCAAATTAACCGTCGTACCTTGCAATACAAACACCTTAAAATTGCTCATCTTTTGGATTATAATGATCGACCTGATCTTAGCCCTGAAGATCGAGATATGTTGATTGAAGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGGCGTTCAAAACCCACACCAGTAGATGAAGCTAGGGCGGGATTGAATATTGTGGAGCAGTCACTCTGGAAAGCTGTTCCTCATTATTTACGTCGAGTTAGCAGCGCTTTAAAGAAGCACACAGGAAAACCACTTCCATTGACTTGCACTCCAATAAAATTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTGACAGCAAAGGTCACAAAAGATGTTTCACTTCTGTCAAGATGGATGGCGATTGACCTCTACATTCGGGAAGTGGATGGCCTAAGATTTGAGCTATCCATGAACCAGTGCAGTGATAAGTTGTCAGAACTGGCACATGAAATTCTAAAAGAAGGTAATGATGAGGAGGATCACCATGAGCACTGGAATGGATCTATGAGTAGAAGTCAATCAAAACATCCTAATCAACAAGCTTCACCACTTCCAACTAAACTTCCAGCTGGAGCTCATTTACCCTCTTGTGCTCGGCCTGAGGGTGGATCTGAGTATCCCAGACACGTGCCAGGAGCTGATCACAAGCAACCCAATCACAAGGGTGGTGAGACTTCAAGTTCAACTGAGAGCAATGGTGGCAGTCAAAATGTCCGTTCGTCAATACCAATTTCACCAAATTCCAGTTCTTCATTAGTTTCAATGACACGCTCGCCTTCCTTCAACTCTAGTCAACTTGTTGCTCAGAGGAAACTGTTTGCAGAATCCCAAATAGGAAGGACCAGTTTTAAGAGGCTTTTGGAGCCAAAGGTCCCTCAGGTTCCTGGAATTGCTCCTTATAGAGTTGTCCTTGGATATATAAAAGATAAGCTTCAGAGAACTCGTAGACGGTTGGAGCTTCTTATCGAGGATGGTCCATCTGAACATGATCCTATGGATTATTATGAAACAACAGATCAGCTTTTAGAACCTCTTCTCCTTTGTTATGAATCTTTGCAATTATGTGGATCTGGGGTGCTAGCTGATGGTCGACTAGCTGATCTGATTCGAAGAGTTGCTACTTTTGGCATGGTGTTAATGAAGCTTGACTTGCGTCAGGAATCCGGCAGACATGCTGAAACAATTGATGCAATTACGAGGTATTTGGATATGGGTACGTACAGTGAATGGGATGAAGAAAAGAAACTGGACTTCTTAACTAGAGAGTTGAAAGGGAAGAGACCACTGGTTCCTCCCAGTATAGAGGCCACAATGAATGACACCCTGCAATGCACTGTCCACTTTTCAGGCCACAACGAATGA

Predicted protein sequences of Glyma02g14521

Limit To All Plant Sequences

>Glyma02g14521.1   sequence type=predicted peptide   gene model=Glyma02g14521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQAGMEDLAEMLEKQLASELSKMTLEEALPLARAFSHHLTLMGIAETHHRVRKGGNMVLAAKSCDDIFNNLLQDGVSPDELYNTVFKQEVEIVLTAHPTQINRRTLQYKHLKIAHLLDYNDRPDLSPEDRDMLIEDLVREITSIWQTDELRRSKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSSALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYIREVDGLRFELSMNQCSDKLSELAHEILKEGNDEEDHHEHWNGSMSRSQSKHPNQQASPLPTKLPAGAHLPSCARPEEGGSEYPRHVPGADHKQPNHKGGETSSSTESNGGSQNVRSSIPISPNSSSSLVSMTRSPSFNSSQLVAQRKLFAESQIGRTSFKRLLEPKVPQVPGIAPYRVVLGYIKDKLQRTRRRLELLIEDGPSEHDPMDYYETTDQLLEPLLLCYESLQLCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETIDAITRYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPPSIEATMNDTLQCTVHFSGHNE*

>Glyma02g14521.2   sequence type=predicted peptide   gene model=Glyma02g14521   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQAGMEDLAEMLEKQLASELSKMTLEEALPLARAFSHHLTLMGIAETHHRVRKGGNMVLAAKSCDDIFNNLLQDGVSPDELYNTVFKQEVEIVLTAHPTQINRRTLQYKHLKIAHLLDYNDRPDLSPEDRDMLIEDLVREITSIWQTDELRRSKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSSALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYIREVDGLRFELSMNQCSDKLSELAHEILKEGNDEEDHHEHWNGSMSRSQSKHPNQQASPLPTKLPAGAHLPSCARPEGGSEYPRHVPGADHKQPNHKGGETSSSTESNGGSQNVRSSIPISPNSSSSLVSMTRSPSFNSSQLVAQRKLFAESQIGRTSFKRLLEPKVPQVPGIAPYRVVLGYIKDKLQRTRRRLELLIEDGPSEHDPMDYYETTDQLLEPLLLCYESLQLCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETIDAITRYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPPSIEATMNDTLQCTVHFSGHNE*

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