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Report for Sequence Feature Glyma02g14430

Feature Type:gene_model
Chromosome:Gm02
Start:12973058
stop:12976459
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g14430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68730AT Annotation by Michelle Graham. TAIR10: Zim17-type zinc finger protein | chr1:25810321-25811128 REVERSE LENGTH=170 SoyBaseE_val: 7.00E-42ISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG3277 KOG Uncharacterized conserved protein JGI ISS
PTHR20922Panther UNCHARACTERIZED JGI ISS
PTHR20922:SF13Panther UNCHARACTERIZED JGI ISS
PF05180PFAM DNL zinc finger JGI ISS
UniRef100_I1JER3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JER3_SOYBN SoyBaseE_val: 5.00E-115ISS
UniRef100_Q9S7X9UniRef Annotation by Michelle Graham. Most informative UniRef hit: F24J5.3 n=1 Tax=Arabidopsis thaliana RepID=Q9S7X9_ARATH SoyBaseE_val: 3.00E-39ISS

Expression Patterns of Glyma02g14430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g14430 not represented in the dataset
Glyma02g14430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g14430
ParalogEvidenceComments
Glyma01g23015 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g14430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g130100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g14430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g14430
>Glyma02g14430.2   sequence type=transcript   gene model=Glyma02g14430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACAAATTTTATTATTTCCGTTTCAATTAGATTCAAACATAAAAATTATTCAATCCAAGTATTTGAATTGATTTGAGTTAATTCATATAAGTATAATCCATACCGTGAAGAGCCGGATAGATGCTAGCACCAATGGCGGCAAGCGCACTGTATAGTTCCCCTATATTCCTTCCTCCTCTCTGGCACCCTAAACCTATGCACCCCCTCTGCTGCTTCAACCCTCCTCCTTCCATTAGCCTCTCCAGGTCAAAGTTTTCTGGTGCAGCAGTGGCACCCCAAAAGCTTCCCCGTCGGGTGTTTAGAGTACGCGGCTTGCTGGGTCACGATTCTGGGACTGCCCCACAACCAGAAACACCCAATTCTGAAGCGGGTACTAGTATTGACTTAAATCTTCCAAGAAGAAGTTTGCTTGTACAGTTTACATGTAACTTGTGTGGTGAAAGAACAGAGAGGCTTGTAAATCGGTTAGCTTATGAAAGGGGTGCTGTTTTTGTACAGGATGTCTACAGCATCACAAACTAGTTGACAATCTGGGACTTATCACAGAATATGACTTTCGGGAGAAAATAAACATAGACTCAGAAACTGATCAAGTTTGATGTAATAACATATAAAACTAGAATTTGTGTGACATTTCTGATTATTTCCATCATTCAAAATTTCAGATCCATTAATATTTCTGAGCAAAGATCACAACAACAAAAATGGAA
Coding sequences of Glyma02g14430
>Glyma02g14430.1   sequence type=CDS   gene model=Glyma02g14430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGCACCAATGGCGGCAAGCGCACTGTATAGTTCCCCTATATTCCTTCCTCCTCTCTGGCACCCTAAACCTATGCACCCCCTCTGCTGCTTCAACCCTCCTCCTTCCATTAGCCTCTCCAGGTCAAAGTTTTCTGGTGCAGCAGTGGCACCCCAAAAGCTTCCCCGTCGGGTGTTTAGAGTACGCGGCTTGCTGGGTCACGATTCTGGGACTGCCCCACAACCAGAAACACCCAATTCTGAAGCGGGTACTAGTATTGACTTAAATCTTCCAAGAAGAAGTTTGCTTGTACAGTTTACATGTAACTTGTGTGGTGAAAGAACAGAGAGGCTTGTAAATCGGTTAGCTTATGAAAGGGGTGCTGTTTTTGTACAGTGTGCAGGATGTCTACAGCATCACAAACTAGTTGACAATCTGGGACTTATCACAGAATATGACTTTCGGGAGAAAATAAACATAGACTCAGAAACTGATCAAGTTTGA

>Glyma02g14430.2   sequence type=CDS   gene model=Glyma02g14430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGCACCAATGGCGGCAAGCGCACTGTATAGTTCCCCTATATTCCTTCCTCCTCTCTGGCACCCTAAACCTATGCACCCCCTCTGCTGCTTCAACCCTCCTCCTTCCATTAGCCTCTCCAGGTCAAAGTTTTCTGGTGCAGCAGTGGCACCCCAAAAGCTTCCCCGTCGGGTGTTTAGAGTACGCGGCTTGCTGGGTCACGATTCTGGGACTGCCCCACAACCAGAAACACCCAATTCTGAAGCGGGTACTAGTATTGACTTAAATCTTCCAAGAAGAAGTTTGCTTGTACAGTTTACATGTAACTTGTGTGGTGAAAGAACAGAGAGGCTTGTAAATCGGTTAGCTTATGAAAGGGGTGCTGTTTTTGTACAGGATGTCTACAGCATCACAAACTAG
Predicted protein sequences of Glyma02g14430
>Glyma02g14430.1   sequence type=predicted peptide   gene model=Glyma02g14430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAPMAASALYSSPIFLPPLWHPKPMHPLCCFNPPPSISLSRSKFSGAAVAPQKLPRRVFRVRGLLGHDSGTAPQPETPNSEAGTSIDLNLPRRSLLVQFTCNLCGERTERLVNRLAYERGAVFVQCAGCLQHHKLVDNLGLITEYDFREKINIDSETDQV*

>Glyma02g14430.2   sequence type=predicted peptide   gene model=Glyma02g14430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAPMAASALYSSPIFLPPLWHPKPMHPLCCFNPPPSISLSRSKFSGAAVAPQKLPRRVFRVRGLLGHDSGTAPQPETPNSEAGTSIDLNLPRRSLLVQFTCNLCGERTERLVNRLAYERGAVFVQDVYSITN*






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