SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G68720 | AT | Annotation by Michelle Graham. TAIR10: tRNA arginine adenosine deaminase | chr1:25804547-25808820 FORWARD LENGTH=1307 | SoyBase | E_val: 2.00E-146 | ISS |
| GO:0002100 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA wobble adenosine to inosine editing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008251 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA-specific adenosine deaminase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1018 | KOG | Cytosine deaminase FCY1 and related enzymes | JGI | ISS | |
| PTHR11079 | Panther | CYTOSINE DEAMINASE | JGI | ISS | |
| PTHR11079:SF12 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00383 | PFAM | Cytidine and deoxycytidylate deaminase zinc-binding region | JGI | ISS | |
| UniRef100_D7KWF4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytidine/deoxycytidylate deaminase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KWF4_ARALL | SoyBase | E_val: 3.00E-154 | ISS |
| UniRef100_UPI0002336B17 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336B17 related cluster n=1 Tax=unknown RepID=UPI0002336B17 | SoyBase | E_val: 0 | ISS |
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Glyma02g14380 not represented in the dataset |
Glyma02g14380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g23056 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g129800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g14380.2 sequence type=CDS gene model=Glyma02g14380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAACGCATATGTTAGCTCAACAATATATGCTGTTAGGTGTAAAGAACCATTTTCATTATCTTTCAATGGCTACTCAAACTTCTGTTACGAAAGATTTGACAGAACCCCATCATACTGTTTGTCATGCTGTGGTTGTTGTGATTACTGTTCAGTCTCCACTTACAGAGTACCCATAAAGCCTTGCCTTATAAATGGCTTGAGGCAATCTGCTCTTCTTCAATTGTCAGCTTCTAGAAGGTTGATATTGGGTGGAGGAGACCATTACCTTTCTCGGCTACCAGCTTATGGTGTCCTCAGAGGTTGTCAGGAGCTTAATTCTTCTGTCAATGAGAGAACTGATTATAGTAGTAGTAGTAGATGGAGAATAAAGGGAAGATATATTCGTGCTGCCTCCCAGAAAGGGAGAGAATTTTCCCATTCATTTGGTTCTGATGGTGCTGAAGCAGTTCTCAGCTTGTTGAGTGAGGAGGCAGATAAGGATGCTATTTGTAGCAAATGTAAGAATGCGTCTTCATCAAAAAGAGTGGAAGTTGATAAAAGAAAAAATGTGAGCAGAGAGAAACATTTGAGTTCGAGTGAGAAAGTAGAAACAGAGAAAAAAGGAATTTTGAAACGGCGTGAATCATCCTCCGTAGACTTGAGAAGAGAATATGGAAAAGCCAACCAAGAAAGGGAAGCCTTTGTAAAAAGTGAAAGCCATAGGAAACGAAGAGATGCATCTAGTTGTTCATCTTATTACTCTCTCTCATCAGGAGATTTTGGGAGTGAGCTGGAAGTTCAAGATGAGATTGGTTTGGAAGAGTTGTCACTGGAATATGAGAAGGATGAAGCAAATTGTCTGGAGGAAGTGAAGGAAGAATTCAACAGGCAAGGGGATGACTCAAAGAAGCTGCAGGCTGTTTCAAATAAGGGAAGAATTGCATTTGGTGTGGATATTGATTGGAACCTAAGGAACAAATCTGAAAAGAAGCTGATTGAGGGAACTCTGCAAAACACTGAATCCATAAGAGAACAACAGGATATGCATTCAAGAGAATTTAGAACACATGATTCTGGTCATAAAAAATCATCTATTTCACAAAAGCGAGTCAATAGTGAGGAAGATAAATCTTCTTTTATTGACAATTTGGATAAGAAAGCAAACAAGGCATATATTCAAACAGTAAACAGAAGAAAGCATCAATCTATAGATGTACAAGAGTCTGGTTGTGATGAAGTTGAGACAACTTTGTTATCACAAAAGAAATTCAGTGGCAGGGAAGGGAAGCTTGAGATATCAGAAACAATGTTGAAGGAAACAACTGATGAATATAAAAAGTTTGTTGGTTCAACTTCTACCACAGGAAAGGAAACTTTGACATCGAAGAAGGCATTCAGTGGCAGGGAAGGGAACCTGGCAATATCAGAAACACTTTCACAAGAAACAAATGATAAACATAAAAAAATTGTTGGTTCTACTTCTACCTCTGGAAGGGATGTGATAGATAGAAGTTCCCAGAAATATTCTGGAAATTTAAAAATTGAAGACACTGAAAGGACCTCAAATACTAGGATGAAGGACATGGGAGTGAAAAAAGTTTCAGTTTTGAGTTCTGTTCAGGGAGTGGATAAGCAGAAACACCAAAAAGGAGAGAAGATCATTACACAGATGAAGGATAAAGAGGGGAGAAAAAAATCTGAGCAATTTTCTGAAGTATCAGAAGCTCACAAGTCTAATGTTGAAGATACATCTAGCATAAAGTCTAGAACTAGATTAAAGAACATGGAAGAAAAATCAAACATAAGCTCAGATGCAAGGGTTACGTTGCTCCAAACAGATAAAAGGACAACTCAGAGTTTCCAACACAGGAAAGGATCTGAACTTGTCAGCACTTTATCAGAAGGCTATGTCAGTGATGAAAAGCAAGTTTCAAGTTCTCAAAAAGCTTATGAGAAGGTGAGATTAATTCCAAAAAGTAAATCAACATCACTTGTTAGAACTAGAGAAAGTTCTAGCCAAACTGATGAAAGGATTGCAAAATTTGAATTGGCCAGAGACGACCAAAGATCTTGCAACCTTTCAATTTCTGATGAAACTAACTCAAGAGAGGAATCCAGCTCCCAGGGATCATTGAGTTTGATTTCTGGGGCTGGAAAACATAGTATATTAGCATCAGGTGAAAAAAGAAGGTCTGCAACAATGTTGATCCCTTCCTCTTCTGAAATGGGTGGAGACTCAGTACAATTTGAACTCACTGCAGGAATTGCAAGCCCTGAGATCTTCCTTGGAACTTCAGAAAGTGGTTCTTCTGCTTTGTATGACAATTCAGGAAGAAGTTCTGCTTTGCATCCAGATGCTATCGATTTAGCTAATCGTTTAGAGAAGTCATCTAGACAGTTTGTTGATGAGTTTGCTGAGAGGGTCATGCATGAAGTAACGACTTCAGAAGCACAAGAGATGGAAGTTACAGGAACAAAGTTGACACTTGAAGTTGGTGGTGATCAGATCTACAGCTCAAGGCAACAAGGCACTCAAAATGACGCTCAGTCAAAGAAGCATGATTCTAGTCGTTCTTCTGGGTTTCCTGGGACAAAAGGACCTTCTGATGAGATGTGGGATGTCATGGAACCATCTGTTGAGCAAGGTCAAGTAGCCAAAGAAACGGATATCAGCAAGGAAACAGGGAAAGCAGTTGTTACTAGAACTGGGAGGTCCTTATGGGGTATGATTGGTGATATTGTTCAATTACGTTGGGGTTCACGTGCTGGTTCCTCCACTTCAGCTGGAAGATCAGCTGAGAGAAACTCACCAAACAAGTCTGACAGTGACACATGGTTTTCTGGGCAGGAGCATGAGGAAACCACTAAAACTAATGTCTTAAAAAAAACAAGTGTACCACCACAAGTCATGACTTCTGATAAGTTAAAACCAGGTAAACATTATACCCAAAGTGAGGGAGAGGTGTCTGACAATACAAAACTGAAAGACAGAGGAAAACATCTCGAAGTTGGATTGTCATCCCCAAATACATTGGAAAGTGGATCAATGTCAGTAGGCGCTTCTCATACTTCTGGAGAGGAAAATGTTAGTGGGACTGAGGATAAAAAAGATTTGAAAGCCACTACTTCTGGCACACAAAACATGGAATTACCAATTTCAGTACCTGCCAGAGGGCCTTCTATTGATGGAGAAATTGTAAGCATCGGTGGATCTGACATGTCTGGAGCTGAGTCAGTGGTTCCAATCAAGGAATCTATTGCTCCTGTGCGGTCTGAATTGTCCGGCTCAGAGAGAAAGGATGGAGAGTTGAAGCAAAGAAAGTTTCAACGGAACAGGCAAGTCTTGAGAGATAGGTTTGATGACTGGGAAGAAGCCTATCAATGTGAACTTGAGCAGCGACGCATAGATGAAATGTTCATGAAGGAAGCACTTTTGGAAGCCAAGAAGGCTGCTGATACATGGGAGGTACCTGTTGGTGCTGTTCTTGTGCAGCATGGGAAAATTATTGCTCGAGGCTGCAACTTAGTTGAAGAGTTACGGGACTCCACTGCCCATGCAGAGATGATTTGTATACGAGAAGCTTCAAAGCTTCTTCGATCATGGAGACTATCAGACACTACACTTTATGTAACGCTTGAGCCATGTCCAATGTGTGCTGGTGCTATCCTTCAGGCAAGAGTAGACACTGTTGTGTGGGGTGCTCCCAATAAGCTTCTTGGAGCTGATGGTAGCTGGATTAGAATTTTCCCTGATGGAGGAGAAAATGTATCAGAACAAAGAGATATGCCACCTGCCCCAGTTCATCCATTCCATCCAAACATGAAAATAAGAAGAGGGGTCTTAGCCACTGAGTGTGCAGATGCAATGCAGCAATTCTTTCAGCTTAGAAGGAAAAAGAAGAAAGAGGAACCACCGAATGGCCCTTCTAGCCTTCCTGTTACTCACCACCCATCCAAGTTACTCAACAAGATACATGACGTCTTCCACATCATGTTCTGTTTGTAA
>Glyma02g14380.2 sequence type=predicted peptide gene model=Glyma02g14380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNAYVSSTIYAVRCKEPFSLSFNGYSNFCYERFDRTPSYCLSCCGCCDYCSVSTYRVPIKPCLINGLRQSALLQLSASRRLILGGGDHYLSRLPAYGVLRGCQELNSSVNERTDYSSSSRWRIKGRYIRAASQKGREFSHSFGSDGAEAVLSLLSEEADKDAICSKCKNASSSKRVEVDKRKNVSREKHLSSSEKVETEKKGILKRRESSSVDLRREYGKANQEREAFVKSESHRKRRDASSCSSYYSLSSGDFGSELEVQDEIGLEELSLEYEKDEANCLEEVKEEFNRQGDDSKKLQAVSNKGRIAFGVDIDWNLRNKSEKKLIEGTLQNTESIREQQDMHSREFRTHDSGHKKSSISQKRVNSEEDKSSFIDNLDKKANKAYIQTVNRRKHQSIDVQESGCDEVETTLLSQKKFSGREGKLEISETMLKETTDEYKKFVGSTSTTGKETLTSKKAFSGREGNLAISETLSQETNDKHKKIVGSTSTSGRDVIDRSSQKYSGNLKIEDTERTSNTRMKDMGVKKVSVLSSVQGVDKQKHQKGEKIITQMKDKEGRKKSEQFSEVSEAHKSNVEDTSSIKSRTRLKNMEEKSNISSDARVTLLQTDKRTTQSFQHRKGSELVSTLSEGYVSDEKQVSSSQKAYEKVRLIPKSKSTSLVRTRESSSQTDERIAKFELARDDQRSCNLSISDETNSREESSSQGSLSLISGAGKHSILASGEKRRSATMLIPSSSEMGGDSVQFELTAGIASPEIFLGTSESGSSALYDNSGRSSALHPDAIDLANRLEKSSRQFVDEFAERVMHEVTTSEAQEMEVTGTKLTLEVGGDQIYSSRQQGTQNDAQSKKHDSSRSSGFPGTKGPSDEMWDVMEPSVEQGQVAKETDISKETGKAVVTRTGRSLWGMIGDIVQLRWGSRAGSSTSAGRSAERNSPNKSDSDTWFSGQEHEETTKTNVLKKTSVPPQVMTSDKLKPGKHYTQSEGEVSDNTKLKDRGKHLEVGLSSPNTLESGSMSVGASHTSGEENVSGTEDKKDLKATTSGTQNMELPISVPARGPSIDGEIVSIGGSDMSGAESVVPIKESIAPVRSELSGSERKDGELKQRKFQRNRQVLRDRFDDWEEAYQCELEQRRIDEMFMKEALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIREASKLLRSWRLSDTTLYVTLEPCPMCAGAILQARVDTVVWGAPNKLLGADGSWIRIFPDGGENVSEQRDMPPAPVHPFHPNMKIRRGVLATECADAMQQFFQLRRKKKKEEPPNGPSSLPVTHHPSKLLNKIHDVFHIMFCL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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