|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G24140 | AT | Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:8715525-8717772 REVERSE LENGTH=414 | SoyBase | E_val: 3.00E-144 | ISS |
GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
GO:0010052 | GO-bp | Annotation by Michelle Graham. GO Biological Process: guard cell differentiation | SoyBase | N/A | ISS |
GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
GO:0045597 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell differentiation | SoyBase | N/A | ISS |
GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0051782 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cell division | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
PTHR11534 | Panther | MYOGENIC FACTOR | JGI | ISS | |
PTHR11534:SF7 | Panther | MYOGENIC FACTOR MYF-5 | JGI | ISS | |
PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
UniRef100_B9RWI9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RWI9_RICCO | SoyBase | E_val: 1.00E-153 | ISS |
UniRef100_UPI0002336B14 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336B14 related cluster n=1 Tax=unknown RepID=UPI0002336B14 | SoyBase | E_val: 0 | ISS |
Glyma02g14290 not represented in the dataset |
Glyma02g14290 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.02g129100 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g14290.2 sequence type=CDS gene model=Glyma02g14290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAAGATCACAACTATTCGACACCACCACCACCACCGTTATCTATGCCTCCAAGCTTCAACACACTAGACTACTCTCTAGACCAACAACAACATCATCATTTGTACGCACCAAATCAACACCAACAACACCTGATGATGAAGTTCCAACAAGGTTCTGGTGATGAAAACAACAATATTGGATCAATGGTGGATTACATGCCTCAAACAACAACAACACTACCCCCACATGGTTTTTATGGTACTGCTACCAGTGCTGCCACAACATCCTATGACAAACTCAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCGAAGTTGGCTTTGAACCAAGCAAAAAGCTGTGAAGAATCTGCAATAGACCCGGTTTATTTTCTTAAGTTTCCCGTGTTGAACGACAAGATGGAGGAGGATCATCAGCAGAACATGATGGTGAATAATGATGACCCTGATGGTGATGAAGCAGAAAATCATCATCATCTTGATGAGAGGTTCAATTTGGTGAGTGTGGAAGGCAAAGATCAGGGAATGATGATGAGAGAAGATGAAGAGACAACTCGTGTTTCCGACGACAACAACAACTCGGTGCAGATTCGGTTTCTTGGACACGAAGAGCCTCAGCAGAAGAATTGTGCAGTGCAGGAGAACAAGAACGGCAAGAAGAAGAGACCAAGAACTGTTAAGACGAGTGAGGAGGTTGAGAGCCAGCGCATGACTCATATAGCGGTTGAAAGGAACCGTAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGGGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAATGTTTGGAGTCACAAAAGAGGAGGAGGCTACTTGGAGAAGCTCAAGCAAGACAAGTTGGGGATCCCTCTCTTGTGGCACAACAACAACAACAGCCTCCATTCTTTCCAACTTTGCCTATTCCAAACGAGCAGATGAAGCTTGTGGAGATGGAGACTGGCCTCCGCGAAGAAACCGCAGAGTGCAAGTCTTGTTTGGCCGATGTTGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATCTACAACTTATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGCTCCGTCCAGCAGATATTCAATTTTATTCATGCAAACACTAGCATGTGA
>Glyma02g14290.2 sequence type=predicted peptide gene model=Glyma02g14290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKDHNYSTPPPPPLSMPPSFNTLDYSLDQQQHHHLYAPNQHQQHLMMKFQQGSGDENNNIGSMVDYMPQTTTTLPPHGFYGTATSAATTSYDKLSFADVMQFADFGPKLALNQAKSCEESAIDPVYFLKFPVLNDKMEEDHQQNMMVNNDDPDGDEAENHHHLDERFNLVSVEGKDQGMMMREDEETTRVSDDNNNSVQIRFLGHEEPQQKNCAVQENKNGKKKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLVAQQQQQPPFFPTLPIPNEQMKLVEMETGLREETAECKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||