SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G26180 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr1:9054824-9056526 FORWARD LENGTH=289 | SoyBase | E_val: 3.00E-107 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PF09991 | PFAM | Predicted membrane protein (DUF2232) | JGI | ISS | |
| UniRef100_G7KMT1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein n=1 Tax=Medicago truncatula RepID=G7KMT1_MEDTR | SoyBase | E_val: 2.00E-106 | ISS |
| UniRef100_I1JEP9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEP9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g14240 not represented in the dataset |
Glyma02g14240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g128500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g14240.1 sequence type=CDS gene model=Glyma02g14240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTAATCCAGTCTCATTTTCTAGAAAAACCAAACCACAACGACCATTTTCCGCCGAACCAAACACGACCTTAGTCTCCTCCATGATTCCCCTCAAAACTCATCCTCATTCTCCCTTCATCTTCTCCGTTTCCAAAACCAACCCACTTTACTTCTCTTTGCTCCCCACTTCTATCTCTCTTCTCTCACTCAAACAACCCCCACCCTCTCTCTCTTCCAATCTTCTCAGGGTTTCAAATGTTGGAGTTTCAGTTTGCAGAACCGAACACCACGAAGAAGAGGAAGACAAGGGGGTTTCGTTGGAGCTTCACGACTTGTCCCCAAATGGGGAAGTGTATCAGAAAACGCTGCAATTGGTTGAGTGTTCCATGTTCGCTGCACTCACCGGTTTGGTCTATTTCTTGAGCAACTCCCTTGCCATTGAGAATTACTTCAGTTGTTTCTTCTCATTGCCAATAGTGATATCCTCAATGAGATGGGGTGTTGATGCGGGCAGGAAAACTCTGGTGGCAACGACTATACTTTTGCTTGTCTTGTCTGGTCCAGTTAAAGCTCTAACTTATTTGCTTAAGCATGGTATAGTTGGTTTCACAATGGGTACTTTGTGGCGGACGGGAGCAAGTTGGAATATGTCAATTTTCTTGTGCACAATTGTACGCGCATTGGGTGCTGTTGGCTTTGTCTTGATTTCGTCTTTCTTGATAAGGGAAAACATACTAGCTTTGATCACCATTAACATTCATGCTTCTCTCACATTTCTCCTTACTGCTGCTGGTGTTACTTCTATTCCTTCAATGAACGTGATATATACCCTATTTGGCATTTTGGTTTTGATCAATAGTGGATGTTTCATGTTCTTGCTCCACCTGTTGTATTCTGTTTTCCTTACTAGAATGGGGATGAAGTCTTCACTAAGATTGCCAAGATGGCTGGAGAGGGCCATCTGA
>Glyma02g14240.1 sequence type=predicted peptide gene model=Glyma02g14240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TNPVSFSRKTKPQRPFSAEPNTTLVSSMIPLKTHPHSPFIFSVSKTNPLYFSLLPTSISLLSLKQPPPSLSSNLLRVSNVGVSVCRTEHHEEEEDKGVSLELHDLSPNGEVYQKTLQLVECSMFAALTGLVYFLSNSLAIENYFSCFFSLPIVISSMRWGVDAGRKTLVATTILLLVLSGPVKALTYLLKHGIVGFTMGTLWRTGASWNMSIFLCTIVRALGAVGFVLISSFLIRENILALITINIHASLTFLLTAAGVTSIPSMNVIYTLFGILVLINSGCFMFLLHLLYSVFLTRMGMKSSLRLPRWLERAI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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