Glyma02g14200 - SoyBase

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Report for Sequence Feature Glyma02g14200

Feature Type:	gene_model
Chromosome:	Gm02
Start:	12733518
stop:	12735664
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g14200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05390	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria	SoyBase	E_val: 0	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF434	Panther		JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_I1JEP6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEP6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9MA52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F22F7.17 protein n=1 Tax=Arabidopsis thaliana RepID=Q9MA52_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g14200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g14200 not represented in the dataset	Glyma02g14200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g14200

Paralog	Evidence	Comments
Glyma01g10004	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g14200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g128200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g14200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g14200

Limit To All Plant Sequences

>Glyma02g14200.3   sequence type=transcript   gene model=Glyma02g14200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGCATTTCTTGCAATCAAAGAATTCTCACCACTAAAACTGGATCGAAATGTTTTGAATCGAAGACAAATATTAAAGAGTTTACAATAACTCGGGTAACCTACTTAATTAGCCAACTGAGTTAAACTCTCGTGATTCTTAGTTTCTCATCTATAGAGAGTGTCCAAATATTTTTAATTTTTAGGAGAGCAGCCAATGGGGAGGTCATGCTTTCCCAAATGCAAGCTTGCCAGAATAATGGGTTGGATACAGATCATTCTGGGAGGGTTGGTCATCTTGGTAAGCCTTTTGAGTCTCACTAGATTCTACTCAGCAGGATTTTTCCTCCACAATGAAGATATATGCCAACACTTCTACAATCTGAGGGATGTTTCTGATGGTTTTGATGTCAAATCATTCTCTGATAGAGTTGGAGAAGTGATAGACATGTTGGAAGCTTTGCAGGCCAAGCTTGAGTCAAAAGTTCAAGAAATGGAGAAAAACAAAGGCACCATGTTGGACAAGAAGTTTCTAGAGGATCAAATAGTTAGCCCTCTTCATAGTGCTAATGTTGCTCTAAGGCAGATTCGGGTTCCCAAGGTTGATGAAGGGACGAACTCCACAGTGAAGGAGGATCATTTGATCAATTTTTTCATCATTGAGGAAATTAGAAAGTACATAACCCCAAAGGAGAATAGGGTTGGTAAGATCAACCTATATGGGGCAGACAAGGTTTACAACACAATAGGCCATGCTTGTGTTTTGTACAAGAAAGAGTTAGAGAAGTACATGGACTATGACATTGGCTCCTATTGTGATGATGATTGGAATTTGGCTCAGAAGCTTATGCTTAATGGGTGTGATCCTTTGCCTAGAAGAAGGTGTTTGACAAGGGCCTCAAAGGAGTACCAAAAGCCTCACCCCATCAATGAGTCACTTTGGAGACTACCAGATGGAAGAAATGTGAGGTGGGGGAATTACCAATGCAGAAACTTTGAGTGCTTATCTAGCAAGAATCCAAAGAGGGGTTACTCAAAATGCATTGGATGTTTTCAAATGGAAAAAGAAAAGTTGAAATGGGTCACTAATAATAATAATAACTCACTTGTTGTGGACTTTTTGATCAGTGATGTATTGGCAATTAAGCAAGGAGAGGTTAGGATTGGACTAGACTATGGCATTGGCACTGGCACATTTGCTGCAAGAATGAGGGAGCAAAATGTGACAATTGTCTCAACAGCACTCAACCTTGGTGCTCCTTTCAATGAGATGATAGCACTTAGGGGTTTGGTTCCTTTGTATGTCACATTGAATCAAAGGCTTCCATTCTTTGATAACACTATGGACTTAGTGCACACCACTGGTTTCATGGATGGTTGGATTGATCTTTTGTTGTTGGATTTTATATTGTATGATTGGGATAGAATTCTAAGGCCAGGAGGTTTGTTGTGGATAGATAGGTTTTTCTGCAATAGAAATGATTTGGATGACTATATGTATATGTTTCTTCAATTGAGGTACAAGAAACACAAGTGGGTTATTTCTCCAAAGTCAAAGGAAGAGGTATATCTCTCTGCATTGCTGGAAAAACCTCCTAGAGCCATATGAACACAATCAATTTCTTGTCCTTCTTTTTTCTCCTAATGTTTATTTATGTGGCTGTATTCTTTGATGTGTAATCAAGATTTTTTCTTTTCTTTTCTTTTGGATATCTTTCCTGGTACGGATTTTTACCGGAATAAATTACAAAAAGTAATGCAATCTTCAATGTGATGGTTCCTTGTATTGAATATCCT

Coding sequences of Glyma02g14200

Limit To All Plant Sequences

>Glyma02g14200.2   sequence type=CDS   gene model=Glyma02g14200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGTCATGCTTTCCCAAATGCAAGCTTGCCAGAATAATGGGTTGGATACAGATCATTCTGGGAGGGTTGGTCATCTTGGTAAGCCTTTTGAGTCTCACTAGATTCTACTCAGCAGGATTTTTCCTCCACAATGAAGATATATGCCAACACTTCTACAATCTGAGGGATGTTTCTGATGGTTTTGATGTCAAATCATTCTCTGATAGAGTTGGAGAAGTGATAGACATGTTGGAAGCTTTGCAGGCCAAGCTTGAGTCAAAAGTTCAAGAAATGGAGAAAAACAAAGGCACCATGTTGGACAAGAAGTTTCTAGAGGATCAAATAGTTAGCCCTCTTCATAGTGCTAATGTTGCTCTAAGGCAGATTCGGGTTCCCAAGGTTGATGAAGGGACGAACTCCACAGTGAAGGAGGATCATTTGATCAATTTTTTCATCATTGAGGAAATTAGAAAGTACATAACCCCAAAGGAGAATAGGGTTGGTAAGATCAACCTATATGGGGCAGACAAGGTTTACAACACAATAGGCCATGCTTGTGTTTTGTACAAGAAAGAGTTAGAGAAGTACATGGACTATGACATTGGCTCCTATTGTGATGATGATTGGAATTTGGCTCAGAAGCTTATGCTTAATGGGTGTGATCCTTTGCCTAGAAGAAGGTGTTTGACAAGGGCCTCAAAGGAGTACCAAAAGCCTCACCCCATCAATGAGTCACTTTGGAGACTACCAGATGGAAGAAATGTGAGGTGGGGGAATTACCAATGCAGAAACTTTGAGTGCTTATCTAGCAAGAATCCAAAGAGGGGTTACTCAAAATGCATTGGATGTTTTCAAATGGAAAAAGAAAAGTTGAAATGGGTCACTAATAATAATAATAACTCACTTGTTGTGGACTTTTTGATCAGTGATGTATTGGCAATTAAGCAAGGAGAGGTTAGGATTGGACTAGACTATGGCATTGGCACTGGCACATTTGCTGCAAGAATGAGGGAGCAAAATGTGACAATTGTCTCAACAGCACTCAACCTTGGTGCTCCTTTCAATGAGATGATAGCACTTAGGGGTTTGGTTCCTTTGTATGTCACATTGAATCAAAGGCTTCCATTCTTTGATAACACTATGGACTTAGTGCACACCACTGGTTTCATGGATGGTTGGATTGATCTTTTGTTGTTGGATTTTATATTGTATGATTGGGATAGAATTCTAAGGCCAGGAGGTTTGTTGTGGATAGATAGGTTTTTCTGCAATAGAAATGATTTGGATGACTATATGTATATGTTTCTTCAATTGAGGTACAAGAAACACAAGTGGGTTATTTCTCCAAAGTCAAAGGAAGAGGTATATCTCTCTGCATTGCTGGAAAAACCTCCTAGAGCCATATGA

>Glyma02g14200.3   sequence type=CDS   gene model=Glyma02g14200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGTCATGCTTTCCCAAATGCAAGCTTGCCAGAATAATGGGTTGGATACAGATCATTCTGGGAGGGTTGGTCATCTTGGTAAGCCTTTTGAGTCTCACTAGATTCTACTCAGCAGGATTTTTCCTCCACAATGAAGATATATGCCAACACTTCTACAATCTGAGGGATGTTTCTGATGGTTTTGATGTCAAATCATTCTCTGATAGAGTTGGAGAAGTGATAGACATGTTGGAAGCTTTGCAGGCCAAGCTTGAGTCAAAAGTTCAAGAAATGGAGAAAAACAAAGGCACCATGTTGGACAAGAAGTTTCTAGAGGATCAAATAGTTAGCCCTCTTCATAGTGCTAATGTTGCTCTAAGGCAGATTCGGGTTCCCAAGGTTGATGAAGGGACGAACTCCACAGTGAAGGAGGATCATTTGATCAATTTTTTCATCATTGAGGAAATTAGAAAGTACATAACCCCAAAGGAGAATAGGGTTGGTAAGATCAACCTATATGGGGCAGACAAGGTTTACAACACAATAGGCCATGCTTGTGTTTTGTACAAGAAAGAGTTAGAGAAGTACATGGACTATGACATTGGCTCCTATTGTGATGATGATTGGAATTTGGCTCAGAAGCTTATGCTTAATGGGTGTGATCCTTTGCCTAGAAGAAGGTGTTTGACAAGGGCCTCAAAGGAGTACCAAAAGCCTCACCCCATCAATGAGTCACTTTGGAGACTACCAGATGGAAGAAATGTGAGGTGGGGGAATTACCAATGCAGAAACTTTGAGTGCTTATCTAGCAAGAATCCAAAGAGGGGTTACTCAAAATGCATTGGATGTTTTCAAATGGAAAAAGAAAAGTTGAAATGGGTCACTAATAATAATAATAACTCACTTGTTGTGGACTTTTTGATCAGTGATGTATTGGCAATTAAGCAAGGAGAGGTTAGGATTGGACTAGACTATGGCATTGGCACTGGCACATTTGCTGCAAGAATGAGGGAGCAAAATGTGACAATTGTCTCAACAGCACTCAACCTTGGTGCTCCTTTCAATGAGATGATAGCACTTAGGGGTTTGGTTCCTTTGTATGTCACATTGAATCAAAGGCTTCCATTCTTTGATAACACTATGGACTTAGTGCACACCACTGGTTTCATGGATGGTTGGATTGATCTTTTGTTGTTGGATTTTATATTGTATGATTGGGATAGAATTCTAAGGCCAGGAGGTTTGTTGTGGATAGATAGGTTTTTCTGCAATAGAAATGATTTGGATGACTATATGTATATGTTTCTTCAATTGAGGTACAAGAAACACAAGTGGGTTATTTCTCCAAAGTCAAAGGAAGAGGTATATCTCTCTGCATTGCTGGAAAAACCTCCTAGAGCCATATGA

Predicted protein sequences of Glyma02g14200

Limit To All Plant Sequences

>Glyma02g14200.2   sequence type=predicted peptide   gene model=Glyma02g14200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSCFPKCKLARIMGWIQIILGGLVILVSLLSLTRFYSAGFFLHNEDICQHFYNLRDVSDGFDVKSFSDRVGEVIDMLEALQAKLESKVQEMEKNKGTMLDKKFLEDQIVSPLHSANVALRQIRVPKVDEGTNSTVKEDHLINFFIIEEIRKYITPKENRVGKINLYGADKVYNTIGHACVLYKKELEKYMDYDIGSYCDDDWNLAQKLMLNGCDPLPRRRCLTRASKEYQKPHPINESLWRLPDGRNVRWGNYQCRNFECLSSKNPKRGYSKCIGCFQMEKEKLKWVTNNNNNSLVVDFLISDVLAIKQGEVRIGLDYGIGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLVPLYVTLNQRLPFFDNTMDLVHTTGFMDGWIDLLLLDFILYDWDRILRPGGLLWIDRFFCNRNDLDDYMYMFLQLRYKKHKWVISPKSKEEVYLSALLEKPPRAI*

>Glyma02g14200.3   sequence type=predicted peptide   gene model=Glyma02g14200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSCFPKCKLARIMGWIQIILGGLVILVSLLSLTRFYSAGFFLHNEDICQHFYNLRDVSDGFDVKSFSDRVGEVIDMLEALQAKLESKVQEMEKNKGTMLDKKFLEDQIVSPLHSANVALRQIRVPKVDEGTNSTVKEDHLINFFIIEEIRKYITPKENRVGKINLYGADKVYNTIGHACVLYKKELEKYMDYDIGSYCDDDWNLAQKLMLNGCDPLPRRRCLTRASKEYQKPHPINESLWRLPDGRNVRWGNYQCRNFECLSSKNPKRGYSKCIGCFQMEKEKLKWVTNNNNNSLVVDFLISDVLAIKQGEVRIGLDYGIGTGTFAARMREQNVTIVSTALNLGAPFNEMIALRGLVPLYVTLNQRLPFFDNTMDLVHTTGFMDGWIDLLLLDFILYDWDRILRPGGLLWIDRFFCNRNDLDDYMYMFLQLRYKKHKWVISPKSKEEVYLSALLEKPPRAI*

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