SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25570 | AT | Annotation by Michelle Graham. TAIR10: Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349 | SoyBase | E_val: 3.00E-172 | ISS |
| GO:0006597 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spermine biosynthetic process | SoyBase | N/A | ISS |
| GO:0008295 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0004014 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenosylmethionine decarboxylase activity | SoyBase | N/A | ISS |
| KOG0788 | KOG | S-adenosylmethionine decarboxylase | JGI | ISS | |
| PTHR11570 | Panther | S-ADENOSYLMETHIONINE DECARBOXYLASE | JGI | ISS | |
| PF01536 | PFAM | Adenosylmethionine decarboxylase | JGI | ISS | |
| UniRef100_Q8S3F8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Glycine max RepID=Q8S3F8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8S3F8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Glycine max RepID=Q8S3F8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g14175 not represented in the dataset |
Glyma02g14175 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g128000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g14175.1 sequence type=CDS gene model=Glyma02g14175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATGGCGGTTTCCGCAATTGGTTTTGAAGGTTTCGAGAAAAGGTTGGAAATATCCTTTTTCCAGCCGGGACTTTTTGCTGACCCTGAAGGAAGGGGTCTAAGGGCTCTTACAAAATCCCAGTTGGGTGAGATTCTAACACCAGCTGCTTGCACCATTGTTTCTTCGCTCAAAAACGATAATGTCGACTCCTATGTTCTATCTGAGTCCAGCCTCTTTGTTTATGCCTACAAGATCATCATCAAAACCTGTGGTACTACTAAGCTATTGCTTGCAATCCCACCCATATTGAAGTTCGCTGAAATGCTTTCCCTTAATGTTAAGTCTGTGAATTACACCAGGGGAAGTTTCATTTTCCCCAGTGCTCAGCCATATCCCCATCGCAACTTTTCTGAGGAAGTTGCTATTCTTGATGGCTACTTTGGCAAACTTGGTGCAGGAAGCAATGCTTATATTTTGGGTGGCCAAGACAAAGCACAGAACTGGCATGTCTACTCTGCTTCTGCAGATTCTGTAACTCAATGTGACAATGTTTACACTCTTGAGATGTGCATGACTGGCCTGGATAGAGAGAAAGCACAGGTTTTCTACAAAGAACAATCTGCTTCAGCTGCCATGATGACTGTTAATTCCGGCATTAGAAAAATTCTTCCAGATTCCGAGATTTGTGACTTTGACTTTGAACCATGTGGTTATTCAATGAACTCTGTTGAAGGCGCTGCTGTTTCTACGATTCATGTTACCCCAGAAGATGGTTTCAGTTATGCAAGCTTCGAAACTGTTGGTTATGACTTCAAAGCGGTGAATCTGAACGAAATGGTTCAGAGGGTATTGGCATGTTTCCTCCCAACTGAGTTTTCTGTTGCAGTTCATGTGGATGGTGCAAGCAAGTCGTTTGAGCAGACCTGCTTTCTGGATGTTAAGGGATACTGTCGTGAAGAGAGGAGCCACGAAGGGCTTGGAATGGGTGGTTCTGTTGTCTACCAAAAATTCGGGAAGACTAGTGACTGTGGTTCACCTAGATCAACTCTAAAGTGCTGGAATGAGGAAGATGAGGAAGAGTAG
>Glyma02g14175.1 sequence type=predicted peptide gene model=Glyma02g14175 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMAVSAIGFEGFEKRLEISFFQPGLFADPEGRGLRALTKSQLGEILTPAACTIVSSLKNDNVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKFAEMLSLNVKSVNYTRGSFIFPSAQPYPHRNFSEEVAILDGYFGKLGAGSNAYILGGQDKAQNWHVYSASADSVTQCDNVYTLEMCMTGLDREKAQVFYKEQSASAAMMTVNSGIRKILPDSEICDFDFEPCGYSMNSVEGAAVSTIHVTPEDGFSYASFETVGYDFKAVNLNEMVQRVLACFLPTEFSVAVHVDGASKSFEQTCFLDVKGYCREERSHEGLGMGGSVVYQKFGKTSDCGSPRSTLKCWNEEDEEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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