SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13580 | AT | Annotation by Michelle Graham. TAIR10: LAG1 longevity assurance homolog 3 | chr1:4645006-4646765 REVERSE LENGTH=308 | SoyBase | E_val: 7.00E-157 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0042761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0050291 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sphingosine N-acyltransferase activity | SoyBase | N/A | ISS |
| KOG1607 | KOG | Protein transporter of the TRAM (translocating chain-associating membrane) superfamily | JGI | ISS | |
| PTHR12560 | Panther | LONGEVITY ASSURANCE FACTOR 1 (LAG1) | JGI | ISS | |
| PF03798 | PFAM | TLC domain | JGI | ISS | |
| UniRef100_I1JEN4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEN4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6NQI8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: LAG1 longevity assurance homolog 3 n=1 Tax=Arabidopsis thaliana RepID=LAG13_ARATH | SoyBase | E_val: 3.00E-154 | ISS |
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Glyma02g14040 not represented in the dataset |
Glyma02g14040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g126800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g14040.1 sequence type=CDS gene model=Glyma02g14040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACTTGGGTTCTTCAACAAGTGACCTCTATTGATTGGAATTGGAACCATGAATCCTACCCAGACTTTCGTGATTTCTCTGTTATACCCTTCTTCGCTCTCTTCTTCCCCTCCCTTCGCTTCCTTCTCGACACGTTCCTATTCGAGCAAGTGGCCAGACGATTGATTTTTGGAAAGGGACACAAGAAGATGGATTTTCAAACACTTGAGAGAAAAAAGAAGATTAGCAAATTTAAGGAATCGGCATGGAAATGTGTTTATTTTCTATCTGCAGAAATTTTTGCTTTGGCAGTAACATATGATGAACCTTGGTTTACTGATACAAGGTACTTTTGGGTGGGGCCAGGGAATCAGATATGGCCAGATCAAAAGATTAAATTGAAATTGAAAGTGCTCTATATGTATGCTGCTGGATTTTATACATACTCCATACTTGCTTTAGTATTTTGGGAAACGAAGCGCTCTGACTTTGTGGTTTCCATGGGCCATCATGTTATTACTGTCATTCTCATCGTGTTATCCTACATTTTTAGGTTTGTTCGTGTTGGATCTGTAGTTTTAGCTCTTCATGATGCTAGTGATGTGTTTATTGAGACAGGAAAAATGTCCAAATACAGTGGTGCTGAAACAACAGCTAGCATTGCATTTATTCTTTTTGTTTTGTGTTTTACCGTGACACGGATCATTTACTACCCATTCTGGATTCTTAGGAGTACGAGCTATGAAGTTGTTCACGCCTTGAAAATGGACCTGGTGGATGGTCCATTATATTATTATGTGTTCAATTCTCTTCTATATTTCTTGCAAGTTCTTCATATATATTGGTGGGTTCTGATGCTTAGGATGCTTGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGATTCAGAAGATGAAGATGAACATAAACATGAAGAATGA
>Glyma02g14040.1 sequence type=predicted peptide gene model=Glyma02g14040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTWVLQQVTSIDWNWNHESYPDFRDFSVIPFFALFFPSLRFLLDTFLFEQVARRLIFGKGHKKMDFQTLERKKKISKFKESAWKCVYFLSAEIFALAVTYDEPWFTDTRYFWVGPGNQIWPDQKIKLKLKVLYMYAAGFYTYSILALVFWETKRSDFVVSMGHHVITVILIVLSYIFRFVRVGSVVLALHDASDVFIETGKMSKYSGAETTASIAFILFVLCFTVTRIIYYPFWILRSTSYEVVHALKMDLVDGPLYYYVFNSLLYFLQVLHIYWWVLMLRMLVKQIQEKGKVSEDIRSDSEDEDEHKHEE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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