Glyma02g13960 - SoyBase

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Report for Sequence Feature Glyma02g13960

Feature Type:	gene_model
Chromosome:	Gm02
Start:	12313441
stop:	12314296
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g13960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G30530	AT	Annotation by Michelle Graham. TAIR10: basic leucine-zipper 42 \| chr3:12139512-12140033 FORWARD LENGTH=173	SoyBase	E_val: 6.00E-48	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF66	Panther	ATBZIP48 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPE	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_Q0GPI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP35 n=1 Tax=Glycine max RepID=Q0GPI4_SOYBN	SoyBase	E_val: 2.00E-127	ISS
UniRef100_UPI000233794C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233794C related cluster n=1 Tax=unknown RepID=UPI000233794C	SoyBase	E_val: 3.00E-143	ISS

Expression Patterns of Glyma02g13960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g13960

Paralog	Evidence	Comments
Glyma01g09510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g13960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g126100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g13960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g13960

Limit To All Plant Sequences

>Glyma02g13960.2   sequence type=CDS   gene model=Glyma02g13960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCCTAGTGAGATCAGAGGAGTTCACTATCTAGCACCTGAAAATCCATTCCTAGTTCCACCAAACTTTAGCCTTCTGCAAAATGACATCCCTAACCTTCATCTTAACACCCTCCTAAGAAATTTTCCAAACTGCCACTACCCTCCTTCAGGCCATGAATTTGTTGTTCCTCCCTCCTCATGCCTCAGCAACAACTCAACCTCTGATGAAGCTGATGAAATCCAGTTCAACATCATTGACGAAAGGAAGCACCGGAGAATGATATCGAATCGAGAATCCGCCCGCAGATCAAGGATGAGGAAGCAGAAACACCTGGATGAGCTATGGTCACAGGTTGTTAGGCTCAGAACTGAAAACCACAGCCTTATTGACAAACTCAACCATGTGTCTGAGTCACATGACAGAGTCCTCCAAGAGAATGCACGCCTCAAGGAAGAAGCTTCGGATCTTCGCCAAATGCTAGCAGACATGCAAATTGGAACCTCTTTTGCTTGCACCATGGAAGATTTGGAGGACCTTCCATGCAACACTTCTCAACTACTCAAACCTGATCCCTTAAACGAATCAATCACTCCTGCAGACATGATTCATGAATGA

Predicted protein sequences of Glyma02g13960

Limit To All Plant Sequences

>Glyma02g13960.2   sequence type=predicted peptide   gene model=Glyma02g13960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPSEIRGVHYLAPENPFLVPPNFSLLQNDIPNLHLNTLLRNFPNCHYPPSGHEFVVPPSSCLSNNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHSLIDKLNHVSESHDRVLQENARLKEEASDLRQMLADMQIGTSFACTMEDLEDLPCNTSQLLKPDPLNESITPADMIHE*

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