Glyma02g13910 - SoyBase

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Report for Sequence Feature Glyma02g13910

Feature Type:	gene_model
Chromosome:	Gm02
Start:	12247014
stop:	12249762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g13910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G14960	AT	Annotation by Michelle Graham. TAIR10: Auxin-responsive GH3 family protein \| chr2:6451659-6453670 REVERSE LENGTH=590	SoyBase	E_val: 0	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03321	PFAM	GH3 auxin-responsive promoter	JGI		ISS
UniRef100_B9GHU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GH3 family protein n=1 Tax=Populus trichocarpa RepID=B9GHU3_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000189D6A7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D6A7 related cluster n=1 Tax=unknown RepID=UPI000189D6A7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g13910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g13910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g125600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g13910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g13910

Limit To All Plant Sequences

>Glyma02g13910.1   sequence type=CDS   gene model=Glyma02g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGGACTCTGCGATTTCGTCCCCATTGGGTCCCCCGGCCTGTGAGAAGGACGCAAAGGCGTTGCGGTTCATCGAAGAAATGACTCGCAACGCCGACGCCGTCCAGGAGAGAGTCCTGGAGGAGATTCTCACACGCAACGCCCAGACAGAGTACCTTAAACGCTTCGAACTCGACGGCGCCGCCGACCGCCAAGCCTTCAAGTCCAAGATTCCCGTCATAACCTACGAGGACGTCCAGCCGGAGATTCAGCGCATCGCCAATGGCGACCGCTCCCCCATCCTGTCCGCTCACCCCATCTCCGAGTTTCTCACCAGTTCTGGGACTTCAGCTGGGGAAAGAAAACTAATGCCCACAATCAAGGAAGAGCTGGATCGTCGCCAACTTCTATACAGCCTCCTCATGCCAGTTATGAACCTTTATGTGCCCGGCTTGGACAAGGGAAAGGGCCTATACTTTTTGTTCGTGAAGTCCGAAACAAGGACCCCGGGTGGGTTACTGGCCCGTCCGGTTCTCACAAGCTACTACAAAAGTGACCATTTCAAGACCCGACCCTATGACCCGTACAATGTTTACACAAGTCCAAATGAAGCCATTCTTTGCTCGGACTCATTCCAAAGCATGTATACTCAAATGCTATGTGGCCTCATTGAGCGCCACCATGTCCTCCGCCTCGGCGCCGTCTTCGCCTCCGGGCTCCTCCGTGCAATCCGGTTCCTCCAACTCAATTGGCCCGAACTTGCCCATGATATCCAAACCGGAACCTTAAATTCTCGGATCACCGACCCGGCAATTAGGAGTTACATGGACAAGGTGCTAAAATCCGACCCGGAATTGGCCCAATTTGTGACACAACAATGTTCCAAGGACAATTGGGAAGGAATCATCACAAGGATTTGGCCCAACACAAAATACTTGGACGTCATCGTAACGGGTGCCATGGCCCAATACATTCCCACTCTTAACTACTACAGCGGAGGAGGGTTGCCACTTGCATGCACCATGTACGCTTCATCAGAGTGTTACTTTGGACTCAACCTTAATCCGATGTGCAAGCCCTCTGAGGTTTCATACACCATTATGCCAAACATGGCATATTTCGAATTCCTTCCCCACGATCCTAAGCCTGGCTCCACCAGTTCAAAACTAGTGGAGTTGGCGGACGTTGAAGTGGGGAAGGAATACGAACTGGTGATCACAACCTATGCGGGACTCTATCGGTACCGTGTGGGCGACATCCTCCGAGTCACCGGTTTCCACAACTCGGCACCACAATTCCACTTCGTGCGCAGGAAGAACGTGTTGCTGAGCATTGACTCAGACAAAACAGACGAGTCAGAGTTGCAAAAGGGGATTGAGAATGCCTCAAAGCTTTTATCAGAGTTCAATACAAGCGTTGTGGAGTACACGAGTTATGCAGACACAACAACGATTCCGGGTCACTACGTGATTTATTGGGAATTGTTGACCAAGGACTCGACGAACTCACCCAGTCACGAGGTGTTGAATCGGTGTTGTTTGGAGATGGAGGAGTGCTTGAACTCGGTGTATAGACAATGTCGTGTTGCTGATCATTCCATTGGCCCATTGGAAATTCGTGTTGTGAGGAATGGGACCTTTGAGGAGCTTATGGATTATGCAATCTCAAGAGGTGCGTCCATAAATCAATATAAGGTGCCAAGATGTGTGAATTTCACACCCATAATGGAGTTATTGGACTCTAGGGTTGTGTCTGTGCATTTTAGCCAGGAATTACCACATTGGACCCCTGAAAGGAGGAGGTGA

Predicted protein sequences of Glyma02g13910

Limit To All Plant Sequences

>Glyma02g13910.1   sequence type=predicted peptide   gene model=Glyma02g13910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVDSAISSPLGPPACEKDAKALRFIEEMTRNADAVQERVLEEILTRNAQTEYLKRFELDGAADRQAFKSKIPVITYEDVQPEIQRIANGDRSPILSAHPISEFLTSSGTSAGERKLMPTIKEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSDHFKTRPYDPYNVYTSPNEAILCSDSFQSMYTQMLCGLIERHHVLRLGAVFASGLLRAIRFLQLNWPELAHDIQTGTLNSRITDPAIRSYMDKVLKSDPELAQFVTQQCSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLNYYSGGGLPLACTMYASSECYFGLNLNPMCKPSEVSYTIMPNMAYFEFLPHDPKPGSTSSKLVELADVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKGIENASKLLSEFNTSVVEYTSYADTTTIPGHYVIYWELLTKDSTNSPSHEVLNRCCLEMEECLNSVYRQCRVADHSIGPLEIRVVRNGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSQELPHWTPERRR*

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