SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37240 | AT | Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr2:15640235-15641720 REVERSE LENGTH=248 | SoyBase | E_val: 2.00E-10 | ISS |
| GO:0010264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016209 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: antioxidant activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG4498 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PF08534 | PFAM | Redoxin | JGI | ISS | |
| UniRef100_I1JEL7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEL7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001D5F6AE | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PREDICTED: redox-regulatory protein FAM213A isoform 2 n=1 Tax=Pongo abelii RepID=UPI0001D5F6AE | SoyBase | E_val: 2.00E-25 | ISS |
|
Glyma02g13800 not represented in the dataset |
Glyma02g13800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g124600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g13800.2 sequence type=transcript gene model=Glyma02g13800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACAAAAAGTTTGTCTGCACATTTAATCCACATTCATGTGACAAGATTATCACTCATCCACGGCAACCAATCATAGTAAGGATAAAATGGCTTCTTTTTCAGTGGAAGAATTCATAGGAAATGGAATTTTGAAGGAACTGCTCCAAAAGTTGTTGGAAGAAGGGTGGGATGATGTACCAACCCTGAAGATTATGAGTTCAGAGGACATGGATTTACTACAGATGACACAAGAGCAAAAGGATGCACTTGGAATCAGATCATACCTGCATGATCGTGGACTAATGCAATATGCAGATAAGATGGAAGATTGTGGGAAAGCTCTGTCAGAGCTTATCAATTTAAGCACCACAGATCTTTCTACGCAATTCGAAATGAAGAGAGGCCACATTGCGCGCTTTATTAACAGAACAACAAGCGATGATTCTGTCAAATTACGTGCACTCGCTGCTCGAAGAAGAAGCAGCACGATGCATAGAGATGATAGCATTCCCAAGAGTGTTGGATCCAATAGCTCTAATAGCTTGACAAGATCACACATAAGAAGCAATGCAGCTTCTGATGCACTTGAACAATCAATGGCTGATATGAAGATTAAAGAAGGATATGTCTTTAAGGGGATTGTTGCTGCTGAACCAGCTGAGCCTAGAGCATGTGGCTGTGTGAATCCACCACCTCCTATCAGTGACCAAGTTGCTCCTTATGGTACTGTTGAAAATATTTCAGTTCAGAAACTTACTCCTGAGTACAAGATTGGCATGGAACCGTTGGTGAAAACCAAGGCTCCTCCACTGAAGGTTTCAGAACTGTGGCGAGATAAACCAGCTGTTTTCCTGTGTCTCAGAAGACCAGGGTGCATCATGTGTAGAGCTGAGGCACACCAGCTCTATTCCAGAAAAGCCATATTTGATGCACTTGGGGTTCAACTTTTTGCAGTTCTTCATGAGCAAATAGACTCAGAGGTAAAAGATTTCTGGCCTCGATACTGGGGCGGTGTCGTGCTTCTTGATCGAGGTAGGGACTTCTTCAAAGCTCTTGGAGGGGGAAAACTGCTCAAGGAGAAGTTCCTATCAGGATTTTTGCTGAATCCTCGATCACTTTCCAACTACAAGCGTGCAAAAGCCATGCATATTGACTACAATTTCAAAGGAGAAGGTGAAATCAAAGGTGGACTCTTCATAATAGGGATGGGAAAGAGTGGCATAGCTTACCAGTTCATAGAGAGGAACTTTGGTGATTGGGCACCTATAGCTGAAGTCATTGAGATCTGTACTCAAATGCAGAATTTTCAGTAAACTGGAGAATTCAATGAACCAACAAGAAGGTCAAAGGATGAGTGTGCAGTACTGAGGGGATCACTCAGAATGATTGAATATATTGGGCATGCATTTAGCCATTCACTAAAGTTCAGTTCCTTTTAATTCCATATCTCCTGCAATCAGGATACAACGTTCTTGCAATATAGATGTCAGTAAACATGCAAGACCTATTCGATAATACTCTTGATTTTAAAAACATTGTGTTTTTTTAGATAGATATAAATATACGGTTATAGACGAGTTGGATTATTAATCAATTATTAGAGTTTAATCAAGGGGATCTATACCTCACTTGATTAAGAAATTTGAATTATTATAAATCTCTAGGTATCTATTTTTTGATTGTTATGGATATTTTTTTTATTAGAGTTTAACTCATTAAAGT >Glyma02g13800.3 sequence type=transcript gene model=Glyma02g13800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACAAAAAGTTTGTCTGCACATTTAATCCACATTCATGTGACAAGATTATCACTCATCCACGGCAACCAATCATAGTAAGGATAAAATGGCTTCTTTTTCAGTGGAAGAATTCATAGGAAATGGAATTTTGAAGGAACTGCTCCAAAAGTTGTTGGAAGAAGGGTGGGATGATGTACCAACCCTGAAGATTATGAGTTCAGAGGACATGGATTTACTACAGATGACACAAGAGCAAAAGGATGCACTTGGAATCAGATCATACCTGCATGATCGTGGACTAATGCAATATGCAGATAAGATGGAAGATTGTGGGAAAGCTCTGTCAGAGCTTATCAATTTAAGCACCACAGATCTTTCTACGCAATTCGAAATGAAGAGAGGCCACATTGCGCGCTTTATTAACAGAACAACAAGCGATGATTCTGTCAAATTACGTGCACTCGCTGCTCGAAGAAGAAGCAGCACGATGCATAGAGATGATAGCATTCCCAAGAGTGTTGGATCCAATAGCTCTAATAGCTTGACAAGATCACACATAAGAAGCAATGCAGCTTCTGATGCACTTGAACAATCAATGGCTGATATGAAGATTAAAGAAGGATATGTCTTTAAGGGGATTGTTGCTGCTGAACCAGCTGAGCCTAGAGCATGTGGCTGTGTGAATCCACCACCTCCTATCAGTGACCAAGTTGCTCCTTATGGTACTGTTGAAAATATTTCAGTTCAGAAACTTACTCCTGAGTACAAGATTGGCATGGAACCGTTGGTGAAAACCAAGGCTCCTCCACTGAAGGTTTCAGAACTGTGGCGAGATAAACCAGCTGTTTTCCTGTGTCTCAGAAGACCAGGGTAATATATTATTGTTGCTACACTTGAGAATTGCCAATTTAGCATGTATTTCAATTTTCAAACAGTGCATTTACTTCAATCATGTGCTCTTATGAGAAATTTGCATTATGCATACTAATATAAGTTTTCATGGTTCCACAC
>Glyma02g13800.1 sequence type=CDS gene model=Glyma02g13800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTTTTCAGTGGAAGAATTCATAGGAAATGGAATTTTGAAGGAACTGCTCCAAAAGTTGTTGGAAGAAGGGTGGGATGATGTACCAACCCTGAAGATTATGAGTTCAGAGGACATGGATTTACTACAGATGACACAAGAGCAAAAGGATGCACTTGGAATCAGATCATACCTGCATGATCGTGGACTAATGCAATATGCAGATAAGATGGAAGATTGTGGGAAAGCTCTGTCAGAGCTTATCAATTTAAGCACCACAGATCTTTCTACGCAATTCGAAATGAAGAGAGGCCACATTGCGCGCTTTATTAACAGAACAACAAGCGATGATTCTGTCAAATTACGTGCACTCGCTGCTCGAAGAAGAAGCAGCACGATGCATAGAGATGATAGCATTCCCAAGAGTGTTGGATCCAATAGCTCTAATAGCTTGACAAGATCACACATAAGAAGCAATGCAGCTTCTGATGCACTTGAACAATCAATGGCTGATATGAAGATTAAAGAAGGATATGTCTTTAAGGGGATTGTTGCTGCTGAACCAGCTGAGCCTAGAGCATGTGGCTGTGTGAATCCACCACCTCCTATCAGTGACCAAGTTGCTCCTTATGGTACTGTTGAAAATATTTCAGTTCAGAAACTTACTCCTGAGTACAAGATTGGCATGGAACCGTTGGTGAAAACCAAGGCTCCTCCACTGAAGGTTTCAGAACTGTGGCGAGATAAACCAGCTGTTTTCCTGTGTCTCAGAAGACCAGGGTGCATCATGTGTAGAGCTGAGGCACACCAGCTCTATTCCAGAAAAGCCATATTTGATGCACTTGGGGTTCAACTTTTTGCAGTTCTTCATGAGCAAATAGACTCAGAGGTAAAAGATTTCTGGCCTCGATACTGGGGCGGTGTCGTGCTTCTTGATCGAGGTAGGGACTTCTTCAAAGCTCTTGGAGGGGGAAAACTGCTCAAGGAGAAGTTCCTATCAGGATTTTTGCTGAATCCTCGATCACTTTCCAACTACAAGCGTGCAAAAGCCATGCATATTGACTACAATTTCAAAGGAGAAGGTGAAATCAAAGGTGGACTCTTCATAATAGGGATGGGAAAGAGTGGCATAGCTTACCAGTTCATAGAGAGGAACTTTGGTGATTGGGCACCTATAGCTGAAGTCATTGAGATCTGTACTCAAATGCAGAACCAACAAGAAGGTCAAAGGATGAGTGTGCAGTACTGA >Glyma02g13800.2 sequence type=CDS gene model=Glyma02g13800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTTTTCAGTGGAAGAATTCATAGGAAATGGAATTTTGAAGGAACTGCTCCAAAAGTTGTTGGAAGAAGGGTGGGATGATGTACCAACCCTGAAGATTATGAGTTCAGAGGACATGGATTTACTACAGATGACACAAGAGCAAAAGGATGCACTTGGAATCAGATCATACCTGCATGATCGTGGACTAATGCAATATGCAGATAAGATGGAAGATTGTGGGAAAGCTCTGTCAGAGCTTATCAATTTAAGCACCACAGATCTTTCTACGCAATTCGAAATGAAGAGAGGCCACATTGCGCGCTTTATTAACAGAACAACAAGCGATGATTCTGTCAAATTACGTGCACTCGCTGCTCGAAGAAGAAGCAGCACGATGCATAGAGATGATAGCATTCCCAAGAGTGTTGGATCCAATAGCTCTAATAGCTTGACAAGATCACACATAAGAAGCAATGCAGCTTCTGATGCACTTGAACAATCAATGGCTGATATGAAGATTAAAGAAGGATATGTCTTTAAGGGGATTGTTGCTGCTGAACCAGCTGAGCCTAGAGCATGTGGCTGTGTGAATCCACCACCTCCTATCAGTGACCAAGTTGCTCCTTATGGTACTGTTGAAAATATTTCAGTTCAGAAACTTACTCCTGAGTACAAGATTGGCATGGAACCGTTGGTGAAAACCAAGGCTCCTCCACTGAAGGTTTCAGAACTGTGGCGAGATAAACCAGCTGTTTTCCTGTGTCTCAGAAGACCAGGGTGCATCATGTGTAGAGCTGAGGCACACCAGCTCTATTCCAGAAAAGCCATATTTGATGCACTTGGGGTTCAACTTTTTGCAGTTCTTCATGAGCAAATAGACTCAGAGGTAAAAGATTTCTGGCCTCGATACTGGGGCGGTGTCGTGCTTCTTGATCGAGGTAGGGACTTCTTCAAAGCTCTTGGAGGGGGAAAACTGCTCAAGGAGAAGTTCCTATCAGGATTTTTGCTGAATCCTCGATCACTTTCCAACTACAAGCGTGCAAAAGCCATGCATATTGACTACAATTTCAAAGGAGAAGGTGAAATCAAAGGTGGACTCTTCATAATAGGGATGGGAAAGAGTGGCATAGCTTACCAGTTCATAGAGAGGAACTTTGGTGATTGGGCACCTATAGCTGAAGTCATTGAGATCTGTACTCAAATGCAGAATTTTCAGTAA >Glyma02g13800.3 sequence type=CDS gene model=Glyma02g13800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTTTTCAGTGGAAGAATTCATAGGAAATGGAATTTTGAAGGAACTGCTCCAAAAGTTGTTGGAAGAAGGGTGGGATGATGTACCAACCCTGAAGATTATGAGTTCAGAGGACATGGATTTACTACAGATGACACAAGAGCAAAAGGATGCACTTGGAATCAGATCATACCTGCATGATCGTGGACTAATGCAATATGCAGATAAGATGGAAGATTGTGGGAAAGCTCTGTCAGAGCTTATCAATTTAAGCACCACAGATCTTTCTACGCAATTCGAAATGAAGAGAGGCCACATTGCGCGCTTTATTAACAGAACAACAAGCGATGATTCTGTCAAATTACGTGCACTCGCTGCTCGAAGAAGAAGCAGCACGATGCATAGAGATGATAGCATTCCCAAGAGTGTTGGATCCAATAGCTCTAATAGCTTGACAAGATCACACATAAGAAGCAATGCAGCTTCTGATGCACTTGAACAATCAATGGCTGATATGAAGATTAAAGAAGGATATGTCTTTAAGGGGATTGTTGCTGCTGAACCAGCTGAGCCTAGAGCATGTGGCTGTGTGAATCCACCACCTCCTATCAGTGACCAAGTTGCTCCTTATGGTACTGTTGAAAATATTTCAGTTCAGAAACTTACTCCTGAGTACAAGATTGGCATGGAACCGTTGGTGAAAACCAAGGCTCCTCCACTGAAGGTTTCAGAACTGTGGCGAGATAAACCAGCTGTTTTCCTGTGTCTCAGAAGACCAGGGTAA
>Glyma02g13800.1 sequence type=predicted peptide gene model=Glyma02g13800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFSVEEFIGNGILKELLQKLLEEGWDDVPTLKIMSSEDMDLLQMTQEQKDALGIRSYLHDRGLMQYADKMEDCGKALSELINLSTTDLSTQFEMKRGHIARFINRTTSDDSVKLRALAARRRSSTMHRDDSIPKSVGSNSSNSLTRSHIRSNAASDALEQSMADMKIKEGYVFKGIVAAEPAEPRACGCVNPPPPISDQVAPYGTVENISVQKLTPEYKIGMEPLVKTKAPPLKVSELWRDKPAVFLCLRRPGCIMCRAEAHQLYSRKAIFDALGVQLFAVLHEQIDSEVKDFWPRYWGGVVLLDRGRDFFKALGGGKLLKEKFLSGFLLNPRSLSNYKRAKAMHIDYNFKGEGEIKGGLFIIGMGKSGIAYQFIERNFGDWAPIAEVIEICTQMQNQQEGQRMSVQY* >Glyma02g13800.2 sequence type=predicted peptide gene model=Glyma02g13800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFSVEEFIGNGILKELLQKLLEEGWDDVPTLKIMSSEDMDLLQMTQEQKDALGIRSYLHDRGLMQYADKMEDCGKALSELINLSTTDLSTQFEMKRGHIARFINRTTSDDSVKLRALAARRRSSTMHRDDSIPKSVGSNSSNSLTRSHIRSNAASDALEQSMADMKIKEGYVFKGIVAAEPAEPRACGCVNPPPPISDQVAPYGTVENISVQKLTPEYKIGMEPLVKTKAPPLKVSELWRDKPAVFLCLRRPGCIMCRAEAHQLYSRKAIFDALGVQLFAVLHEQIDSEVKDFWPRYWGGVVLLDRGRDFFKALGGGKLLKEKFLSGFLLNPRSLSNYKRAKAMHIDYNFKGEGEIKGGLFIIGMGKSGIAYQFIERNFGDWAPIAEVIEICTQMQNFQ* >Glyma02g13800.3 sequence type=predicted peptide gene model=Glyma02g13800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFSVEEFIGNGILKELLQKLLEEGWDDVPTLKIMSSEDMDLLQMTQEQKDALGIRSYLHDRGLMQYADKMEDCGKALSELINLSTTDLSTQFEMKRGHIARFINRTTSDDSVKLRALAARRRSSTMHRDDSIPKSVGSNSSNSLTRSHIRSNAASDALEQSMADMKIKEGYVFKGIVAAEPAEPRACGCVNPPPPISDQVAPYGTVENISVQKLTPEYKIGMEPLVKTKAPPLKVSELWRDKPAVFLCLRRPG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
