SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G04030 | AT | Annotation by Michelle Graham. TAIR10: Chaperone protein htpG family protein | chr2:1281983-1285909 FORWARD LENGTH=780 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009704 | GO-bp | Annotation by Michelle Graham. GO Biological Process: de-etiolation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010157 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chlorate | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| KOG0019 | KOG | Molecular chaperone (HSP90 family) | JGI | ISS | |
| PTHR11528 | Panther | HEAT SHOCK PROTEIN 90 | JGI | ISS | |
| PTHR11528:SF29 | Panther | HEAT SHOCK PROTEIN 90 | JGI | ISS | |
| PF00183 | PFAM | Hsp90 protein | JGI | ISS | |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | ISS | |
| UniRef100_F4IU89 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein htpG family protein n=2 Tax=Arabidopsis thaliana RepID=F4IU89_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JEL6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEL6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g13790 not represented in the dataset |
Glyma02g13790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g09310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g124500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g13790.1 sequence type=CDS gene model=Glyma02g13790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCTGTGCTGAGCAGAACCATGGCCACGGCCTCTCTGGCCTCGCTTCCTCCTTCTTCCCCTTTTGCGAGGACTTCCCTTCTCAGAAGCGCTTTTCTGCCGCCGCAAATAGGGCTCGGCAGGAACTGCTTCTCCCCCGCCGCGGGGCTGCGGTGGACGCAGCAGCGGCGTGAGGGAAGGAGGGGAGGGCTAACCGTGCGGTGTGAGGCCGCGGTGGCGGAGAAGGACGAGGCCACCGGGGAGAAGTTTGAGTACCAGGCCGAGGTGAGTCGATTATTGGATTTGATTGTTCACAGTCTGTACAGCCACAAGGAAGTTTTCCTTCGTGAACTTGTCAGCAATGCTAGTGATGCTTTGGACAAGTTGAGATTCTTAAGTGTGACTGAGCCTTCTTTGCTCGGAGATGCTGGTGATCTAGAGATACGTATCAAGTCTGATCCAGACAATGGAACTATTACTATAACAGATACTGGTATTGGAATGACTAAAGAAGAGCTCATTGATTGTCTTGGAACCATTGCTCAGAGTGGTACCTCAAAATTTTTGAAGGCACTTAAGGAAAACAAGGATCTAGGAGCAGATAATGGTCTGATTGGTCAATTTGGTGTTGGATTCTACTCGGCTTTTCTTGTTGCTGAGAGGGTTGTTGTTTCTACAAAGAGCCCAAGATCAGATAAGCAATATGTGTGGGAAGCAGAAGCTGACAGTAGCTCTTATGTGATAAAAGAAGAAACTGATCCTGAAAAGGTTCTGCGTCGTGGTACACAGATTACACTCTATTTAAGAGAGGATGACAAGTATGAATTCTCAGAGCCAAGCAGGATTCAGGGTTTGGTGAAGAATTACTCACAGTTTGTTTCCTTCCCCATCTACACATGGCAAGAAAAGTCAAGAACTGTGGAGGTGGAAGAGGAGGAAGAACCCAAAGAAGGGGAGGAACCAAAAGAAGAGGGTGAGAAAAAGAAGGTGAAAAAGACTAAAACTGAGAAGTATTGGGACTGGGAATTGGCCAATGAAACGAAGCCAATATGGATGCGCAATCCAAAGGAAGTTGAAAAGGAGGAGTACAATGAATTTTATAAGAAGACTTTTAGTGAATTCTTAGAACCACTTGCACATACTCACTTCACTACCGAGGGTGAGGTTGAGTTCAGAAGTATTCTGTACGTTCCGGGAATGGGACCTCTTAACAATGAAGAAGTAGTGAACCCTAAAACAAAGAACATACGCTTGTATGTTAAGCGTGTATTCATTTCAGATGATTTTGATGGGGAGCTGTTTCCACGTTACCTGAGCTTTGTGAAGGGTGTGGTTGATTCAGATGACCTTCCTCTCAATGTTTCTCGGGAGATCCTTCAAGAAAGCAGAATTGTAAGGATAATGAGAAAGAGACTTGTCAGGAAGGCATTTGATATGATTCAAGACCTTGCTGAAAGTGAAAATAAAGAGGACTACAAAAAATTCTGGGAGAACTTTGGTAGGTTCATAAAATTAGGTTGCATTGAAGACACTGGAAATCATAAGCGCATTACACCATTATTGAGGTTTTACACTTCCAAAAGTGAGGAGGAACTTAAAAGCCTAGATGATTATGTTGAAAACATGGGAGAAAACCAAAAGGCTATCTTTTACCTAGCAACTGACAGCTTGAAGAGTGCAAAGACTGCTCCATTTTTGGAGAAATTGGTTCAAAAAGATATTGAGGTTCTTTATTTGGTTGAACCTATTGATGAGGTTGCCATTCAGAACCTACAGACCTACAAAGAAAAGAAATTTGTTGATATCAGCAAGGAGGATTTGGAATTAGGTGATGAGGATGAGGTCAAAGAGAGGGAAAACAAGCAAGAATACAACCTACTCTGTGATTGGATAAAACAACAACTTGGTGACAAGGTGGCCAAAGTTCAAATCTCAAATCGCTTGAGTTCATCTCCTTGTGTGCTTGTATCAGGGAAGTTTGGTTGGTCTGCAAACATGGAGAGACTAATGAAGGCACAAGCCCTTGGGGACACTGCAAGTTTGGAGTTTATGAGGGGGAGGAGAATATTGGAGATTAATGCAGATCACCCAATTATCAAAGACTTAAGTGCTGCCTGCAAGAATGCACCTGACAGCAGCGAAGCTAAGCGAGCAGTTGACCTCTTATACGACACGGCTCTAATTTCTAGTGGATTTTCTCCTGACAGCCCTGCTGAGTTAGGAAATAAGATTTACGAAATGATGGCCTTGGCCTTGGGAGGAAGATGGGGTAGATCAGAAGAAGAGGAGGGAGATGCTTCTGTTGAAGCTGCTGATTCAAGCACAAGTGAAGAAAGTTCAGAGCCAGAAGTTTATGAACCTTCTGAAGTCATTGCAGAGAGCGATCCTTGGACAACTGATTAG
>Glyma02g13790.1 sequence type=predicted peptide gene model=Glyma02g13790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPVLSRTMATASLASLPPSSPFARTSLLRSAFLPPQIGLGRNCFSPAAGLRWTQQRREGRRGGLTVRCEAAVAEKDEATGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKSDPDNGTITITDTGIGMTKEELIDCLGTIAQSGTSKFLKALKENKDLGADNGLIGQFGVGFYSAFLVAERVVVSTKSPRSDKQYVWEAEADSSSYVIKEETDPEKVLRRGTQITLYLREDDKYEFSEPSRIQGLVKNYSQFVSFPIYTWQEKSRTVEVEEEEEPKEGEEPKEEGEKKKVKKTKTEKYWDWELANETKPIWMRNPKEVEKEEYNEFYKKTFSEFLEPLAHTHFTTEGEVEFRSILYVPGMGPLNNEEVVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKAFDMIQDLAESENKEDYKKFWENFGRFIKLGCIEDTGNHKRITPLLRFYTSKSEEELKSLDDYVENMGENQKAIFYLATDSLKSAKTAPFLEKLVQKDIEVLYLVEPIDEVAIQNLQTYKEKKFVDISKEDLELGDEDEVKERENKQEYNLLCDWIKQQLGDKVAKVQISNRLSSSPCVLVSGKFGWSANMERLMKAQALGDTASLEFMRGRRILEINADHPIIKDLSAACKNAPDSSEAKRAVDLLYDTALISSGFSPDSPAELGNKIYEMMALALGGRWGRSEEEEGDASVEAADSSTSEESSEPEVYEPSEVIAESDPWTTD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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