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Report for Sequence Feature Glyma02g13720

Feature Type:gene_model
Chromosome:Gm02
Start:12047819
stop:12050644
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g13720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G03980AT Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:1260907-1262408 FORWARD LENGTH=367 SoyBaseE_val: 6.00E-84ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI ISS
PTHR22835:SF39Panther LATERAL SIGNALING TARGET PROTEIN 2 JGI ISS
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI ISS
UniRef100_I1JEL1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEL1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HVX7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lipolytic enzyme, G-D-S-L n=1 Tax=Medicago truncatula RepID=Q2HVX7_MEDTR SoyBaseE_val: 1.00E-96ISS

Expression Patterns of Glyma02g13720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g13720
ParalogEvidenceComments
Glyma01g09190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g13720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g124000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g13720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g13720
>Glyma02g13720.1   sequence type=CDS   gene model=Glyma02g13720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGCCAGTATCTCATCACCCTTTGTTTTGTGTTAACTTTGCCTTTTCCCCTATCATCAACAACGAACTCATATGAGTCATCATGTCACAAAAAAAAGTTTCCAGCTTTGTATGTTTTTGGTGATTCCCTAATTGATTGTGGGAATAACAATCATCTTCCGAGCGGTGGAGCAGATTATCTTCCTTATGGTATAGATTTTATGGGTGGCAACACACCAACCGGTCGAGCCACTAATGGAAAAACCGTGGCTGATTTTCTTGCTATGCATCTAGGACTACCCTTTGTCCATCCTTACTTGGATCTTACAAATCATCAAAGGAACAAAATCAGAACAGGCATTAATTATGCCTCTGGTGGGTCTGGCATTCTTCCCGACACTAACAACGTGACGTCTTTGACGCTTGATAAGCAAATTAAGTTCTTCCATAGGACTGTTAAGCATAATTTGCATAAGATGTTCAATGAGAAAGAAAAAATGGAGAAGCATTTATCTGAATCCTTGTTTTTTGTCTCTACGGGGGTGAATGATTACTTCCATAATGGGACCTTCCGCGGCAACAAAAACCTTTCTTTATTCCTGCTTAATGAATTCACCCTACGCATCCAGAGAATATATGATCTAGGAGCAAGAAAATTTTTCGTGAACAACATTCCCCCAGCAGGTTGCTTTCCATCAAAAGCTATCCGAGAAAGACCAAGAGGAAATTGTGATGAGAAAATAAACAAAGCTATCAGCTTTTACAATAGAAGGTTACCTGAAGTGCTCCATGAGTTGCAATCACTGCTTCCTGGCTTCAGCTTTGTACATGCAGATCTTTTCGGATTCTTTAAGGAGCTAAGGGAAACCGGAAAGAGTTATGGGATAGTGGAAACATGGAAACCTTGCTGCCCTAACACCATTTATGGTGATCTCCAATGCCATCCCAACACTGTTCCTTGTCCAAACAGAGACACTCATCTTTTCTGGGATGAACACCCCACACAAATCGTAAACCAAATATATGCAAGGCTTTGCTTCATTGAGGGGACCATTTGCAAGTCCTCGGGCCTCAAACTAATCTAG
Predicted protein sequences of Glyma02g13720
>Glyma02g13720.1   sequence type=predicted peptide   gene model=Glyma02g13720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSQYLITLCFVLTLPFPLSSTTNSYESSCHKKKFPALYVFGDSLIDCGNNNHLPSGGADYLPYGIDFMGGNTPTGRATNGKTVADFLAMHLGLPFVHPYLDLTNHQRNKIRTGINYASGGSGILPDTNNVTSLTLDKQIKFFHRTVKHNLHKMFNEKEKMEKHLSESLFFVSTGVNDYFHNGTFRGNKNLSLFLLNEFTLRIQRIYDLGARKFFVNNIPPAGCFPSKAIRERPRGNCDEKINKAISFYNRRLPEVLHELQSLLPGFSFVHADLFGFFKELRETGKSYGIVETWKPCCPNTIYGDLQCHPNTVPCPNRDTHLFWDEHPTQIVNQIYARLCFIEGTICKSSGLKLI*






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