Report for Sequence Feature Glyma02g13710
Feature Type: gene_model
Chromosome: Gm02
Start: 12031318
stop: 12034685
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g13710
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G13635 AT
Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein | chr1:4674248-4675784 FORWARD LENGTH=311
SoyBase E_val: 2.00E-116 ISS
GO:0006281 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA repair
SoyBase N/A ISS
GO:0006284 GO-bp
Annotation by Michelle Graham. GO Biological Process: base-excision repair
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0008725 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA-3-methyladenine glycosylase activity
SoyBase N/A ISS
PF03352 PFAM
Methyladenine glycosylase
JGI ISS
UniRef100_G7LG85 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DNA-3-methyladenine glycosylase n=1 Tax=Medicago truncatula RepID=G7LG85_MEDTR
SoyBase E_val: 2.00E-129 ISS
UniRef100_UPI0002337943 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337943 related cluster n=1 Tax=unknown RepID=UPI0002337943
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g13710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma02g13710 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g123800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g13710
Coding sequences of Glyma02g13710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g13710.1 sequence type=CDS gene model=Glyma02g13710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAAGAAAACAAGTGTCCAAGAGTCACGTAAATTCAACCAATTATTTTTCCCCAAGCAACACAACAAAGTGTACCCAATTAGGCTACAGAGAAGCTCTTCAACTTCATCCTTGTCTTCATTATCATCATCATTGTCACAAAAGTCAGATGACTCTTCTCTAACAGATTCCTTGAATCTAGCAGATGAGAGTTTTCAATTTGCACTGAATTTGATTTCGCCGCGTTGTCAAAGAAGAGAACCAGAAATTATTAATGATGCACACCAACAACAAATTCCACAGACTGCTGAGGCTGGTGAATTGAAAAGGTGCAACTGGATCACTAAGAACTGTGATGAGGCTTACATTCAATTTCACGATGAGTGCTGGGGAGTCCCAGCTTACGATGACAAAAAATTGTTTGAGCTGCTTACACTATCAGGATTGCTGATAGATTACAACTGGACCGAAATTCTAAAAAGAAAGGAAATTCTTAGAAAAGTTTTTGCTGGATTTGATCCTAATACTGTGGCCAAAATGGAGGAGAAAGAAATCATGGAAATAGCATCAAACAAAGAAGTTTTGTTAGCCGATTGCAGAGTTAGGTGCATAGTAGACAATGCCAAATGCATAATGAAGATTGTGAGGGAATGTGGATCATTCAGCTGCTATATATGGGGCTATGTGAATCACAAACCAGTGATTAACAGATACAGATACCCAAGAGATGTCCCTCTAAGGACTACAAAAGCAGATACCATCAGCAAGGACTTGATAAAGCGTGGCTTTCAATTTTTGGGTCCAGTGATAGTTTATTCTTTTATGCAAGCTGCAGGATTGGCAATTGATCATCTTGTGGATTGTTATAGGCACAATGAATGTGTAAGGCTCGCAGAAAGGCCTTGGAGACATTTGTAA
Predicted protein sequences of Glyma02g13710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g13710.1 sequence type=predicted peptide gene model=Glyma02g13710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEKKTSVQESRKFNQLFFPKQHNKVYPIRLQRSSSTSSLSSLSSSLSQKSDDSSLTDSLNLADESFQFALNLISPRCQRREPEIINDAHQQQIPQTAEAGELKRCNWITKNCDEAYIQFHDECWGVPAYDDKKLFELLTLSGLLIDYNWTEILKRKEILRKVFAGFDPNTVAKMEEKEIMEIASNKEVLLADCRVRCIVDNAKCIMKIVRECGSFSCYIWGYVNHKPVINRYRYPRDVPLRTTKADTISKDLIKRGFQFLGPVIVYSFMQAAGLAIDHLVDCYRHNECVRLAERPWRHL*