Glyma02g13700 - SoyBase

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Report for Sequence Feature Glyma02g13700

Feature Type:	gene_model
Chromosome:	Gm02
Start:	12015226
stop:	12018328
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g13700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03890	AT	Annotation by Michelle Graham. TAIR10: phosphoinositide 4-kinase gamma 7 \| chr2:1186199-1188151 FORWARD LENGTH=650	SoyBase	E_val: 0	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0004430	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol 4-kinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG2381	KOG	Phosphatidylinositol 4-kinase	JGI		ISS
PTHR15245	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15245:SF11	Panther	gb def: T17H3.7	JGI		ISS
PF00454	PFAM	Phosphatidylinositol 3- and 4-kinase	JGI		ISS
UniRef100_B9RLG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inositol or phosphatidylinositol kinase, putative n=1 Tax=Ricinus communis RepID=B9RLG3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JEK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEK9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g13700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g13700

Paralog	Evidence	Comments
Glyma01g09120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g13700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g123700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g13700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g13700

Limit To All Plant Sequences

>Glyma02g13700.1   sequence type=CDS   gene model=Glyma02g13700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGGAAACTCGACAGCCCTGTGCAGACTCAGATGGCTGTGGCAGTGATAAGGAGCAGTCCACTTGGGAGAGAGTACCACGGGAAGCAACCCGCGGGTCGGAGGCGCGTGTTCGTGCAGACGGAGAAAGGGTGTGTGTTGGGTATGGATTTGGATCGTGGTGACAATGTGCACACTGTTAAGAGGAGGCTGCAGCTTGCCCTCAATGTTCCGGTTGATGAGAGTTATCTCACTTTTGGGGATATGGTCTTCAAGAATGACCTTAGTGCTGTTCGGAACGATACCCCCCTTTTGCTCACTAGGGGGAAGAATACTCATATGCCTAGGAGTTCCTCCACCCCATGTCTATCGCCAAAGGGGAGGGACATTGATAAAAGTGGGCCTATTGAGATATTGGGACAGTCGAATCGGCTTGATGGGATCAAGCACATGATCAAGGACATTATGAAGGCGATTAAGATGGGGATTGAACCGATTCCGGTGCATAGTGGGCTTGGAGGTGCTTACTATTTCAGAAACAGTAAGGGGGATAGTGTTGCAATTGTGAAGCCAACCGATGAGGAGCCTTTTGCCCCGAATAACCCGAAAGGTTTTGTTGGCAAGGCGCTTGGGCAGCCTGGGCTGAAGCGATCTGTTCGGGTCGGGGAGACCGGATTTAGAGAGGTTGCTGCTTATCTTCTTGATTATGATCATTTTGCTAATGTGCCTCCTACTGCGTTGGTGAAGATTACCCACTCGGTGTTCAATGTGAATGATGGTGTCAATGGGAACAATTTATGGAGGAAAAGGCTGTTTAGCAAGATTGCGTCTTTCCAGCAGTTTATCCCTCATGATTTTGATGCCAGTGATCATGGGACATCGAGCTTCCCTGTTGCTTCTGTGCATCGTATAGGGATTTTGGACATTAGGATTCTTAACACGGATAGGCATGCTGGGAACTTGTTGGTTAGGAAACTTGATGGCATCGGGAGTTTTGGTCAGGTGGAGTTGATTCCCATTGATCACGGGCTCTGCCTGCCTGAAACTTTGGAGGATCCATATTTTGAGTGGATTCATTGGCCACAGGCTTCCATTCCATTCTCGGAGGATGAGCTTGCCTATATTGAAGATCTTGACCCTTATCATGATTGTGAGATGCTGAGAAGGGAACTGCCGATGATCCGAGAGGCATGTCTCAGAGTCTTGGTGCTGTGCACTATTTTCCTCAAGGAGGCTGCGGCTTATGGCCTTTGCCTTGCTGAAATTGGAGAGATGATGACTAGGGAGTTCCGCAGGGGTGAGGAGGAGCCCAGTGAACTTGAGGTTGTTTGTTTGGAGGCAAGGAAGATAGTGGTGGAAAGAGACAGGGAGGAACTGTCTCCCAGGTCTGAGATGAGAGATGATGAGTTTCTGTTTGATATAGATTATTATGATGAATTTGGATCAGATTTTACGCCAAAGATGGCAATAGATGACCCTTTAACCAGAGCAACTTTTCTGCCTGCACTTGGGAATGGGCAGTCTCGTAACCCGCTTTCCAAATTGGATGAATGCATTGAGGAGGAAGAGGAGGAAGAGGAGGAAGCTGAGGGAGAATCTCCTCAGGGGTTTGTTACTTCTGCTGCTGAAGAAAAAATCCCAAGTGTTTCAGAACTTTCTGTGTCTCTGAAAAATACCATGTTAGATGGGAAAAACCAGAATCAGCAGAAATATTCAGGAGGAAAGGTGGAGAATGGTCATTTTGCAAATACATCATCTGGTCACAAGAGTGCCAATGAGCAGCTTCCTCCAAGCATAAGCTTTGTGGATGTGACAGAAATGACCGAGGATGAATGGCCATTGTTTCTGGAGAAGTTTCAAGAGCTGCTGTATCCGGCATTTGCCAAGAGGAAATCCATAACCTTAGGTCAGAGGCAGAGACAGAGGCTTGGTACTTCCTGCCAGTTTTGA

Predicted protein sequences of Glyma02g13700

Limit To All Plant Sequences

>Glyma02g13700.1   sequence type=predicted peptide   gene model=Glyma02g13700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRKLDSPVQTQMAVAVIRSSPLGREYHGKQPAGRRRVFVQTEKGCVLGMDLDRGDNVHTVKRRLQLALNVPVDESYLTFGDMVFKNDLSAVRNDTPLLLTRGKNTHMPRSSSTPCLSPKGRDIDKSGPIEILGQSNRLDGIKHMIKDIMKAIKMGIEPIPVHSGLGGAYYFRNSKGDSVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKRSVRVGETGFREVAAYLLDYDHFANVPPTALVKITHSVFNVNDGVNGNNLWRKRLFSKIASFQQFIPHDFDASDHGTSSFPVASVHRIGILDIRILNTDRHAGNLLVRKLDGIGSFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSEDELAYIEDLDPYHDCEMLRRELPMIREACLRVLVLCTIFLKEAAAYGLCLAEIGEMMTREFRRGEEEPSELEVVCLEARKIVVERDREELSPRSEMRDDEFLFDIDYYDEFGSDFTPKMAIDDPLTRATFLPALGNGQSRNPLSKLDECIEEEEEEEEEAEGESPQGFVTSAAEEKIPSVSELSVSLKNTMLDGKNQNQQKYSGGKVENGHFANTSSGHKSANEQLPPSISFVDVTEMTEDEWPLFLEKFQELLYPAFAKRKSITLGQRQRQRLGTSCQF*

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