SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69040 | AT | Annotation by Michelle Graham. TAIR10: ACT domain repeat 4 | chr1:25957843-25960079 FORWARD LENGTH=455 | SoyBase | E_val: 0 | ISS |
| GO:0006521 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009735 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016597 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid binding | SoyBase | N/A | ISS |
| PTHR13734 | Panther | TRNA-NUCLEOTIDYLTRANSFERASE 1 | JGI | ISS | |
| PTHR13734:SF23 | Panther | ACR3 (ACT DOMAIN REPEAT 3) | JGI | ISS | |
| PF01842 | PFAM | ACT domain | JGI | ISS | |
| UniRef100_G7JY63 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ACR4 n=1 Tax=Medicago truncatula RepID=G7JY63_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JEJ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEJ6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g13540 not represented in the dataset |
Glyma02g13540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g08260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g122500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g13540.1 sequence type=CDS gene model=Glyma02g13540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTTATGTCTGAGGTCAACATGAGCTTCTCTCACTACATGGATGATGAATATGAGAAACTCTTCCGGAGAATGAACCCTCCTAGGGTTGTAATCGATAATGAAGCCTGCAAGAATGCCACTGTTATACGGGTTGATAGTGCAAACAAGCATGGAATACTTCTTGAAGTTGTACAAATCCTCACTGATCTGAACCTCATCATAACTAAGGCTTACATATCTTCAGATGGTGGATGGTTCATGGATGTTTTTAATGTTACTGGCCAAGATGGAAACAAGGTAACTGATGAAGCCATTTTGGATTACATTAGAAAGTCTCTTGGTCCCGAATCTTGTGTTACATCTCCAATGAGATCTGTTGGGGTTAAGCAAACAATGGACCACACTGCAATTGAGCTTATGGGGACTGATAGGCCAGGGCTGCTTTCAGAAGTGAGTGCTGTTCTGACCAACCTCAAGTGCAATATACTGAATGCAGAGGTGTGGACTCACAACACTCGTGCTGCGGCCGTAATGCACGTGACCGACGAAGAAACCGGTTCCGCCATCTCTGATCCTCAGAGGCTTTCTATAATCAAGGAGCTTCTGTGCAATGTGCTTGGTGGTGGCAACAAGAAGAGGGGGGCCAAGACTGTTGTCACGGATGAAGCCACACACACTGAGAGAAGGCTTCACCAAATGATGTTTGCTGATAGGGATTATGAACGAGTTAATGATGATGATGACTTCGCTGAGAAGCAAAGGCCTAATGTGAATGTTGTGAATTGGTCTGATAAAGATTATTCTGTGGTTACTATTCAGTGTAAGGATAGGCCAAAGCTTCTCTTTGACACAGTTTGTACTTTGACAGACATGCAGTATGTGGTTTTTCATGCAAACATTGATGCTGAGGGGCCAGAAGCATATCAGGAATACTACATCAAGCATATAGATGGGTCCCCTGTGAAATCAGATGCAGAAAGACAAAGAGTGATACAATGTCTTGCAGCTGCAATTGAGAGAAGAGTTTCTGAGGGTTTGAAGCTAGAACTCTGCACCACCGACAGAGTTGGACTTCTATCTGATGTCACACGTATCTTCAGAGAGAATAGCCTCACAGTTACAAGGGCAGAAGTGGCCACAAAAGGAGGCAAAGCTGTGAACACTTTCTATGTTCGTGGTGCTTCAGGTTTCCCTGTTGATTCCAAGACCATAGAATCCATAAGGCAAACAATTGGCAACACAATCCTTAAAGTAAAGGGTAGCCCTGAAGAGATGAAATCTGTTCCTCAGGATTCTCCCACCAGATCACTCTTTAGTGGTCTTTTCAAGTCCAGATCTTTTGTGAACTTTGGCTTGGTGAAGTCTTATTCTTGA
>Glyma02g13540.1 sequence type=predicted peptide gene model=Glyma02g13540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFMSEVNMSFSHYMDDEYEKLFRRMNPPRVVIDNEACKNATVIRVDSANKHGILLEVVQILTDLNLIITKAYISSDGGWFMDVFNVTGQDGNKVTDEAILDYIRKSLGPESCVTSPMRSVGVKQTMDHTAIELMGTDRPGLLSEVSAVLTNLKCNILNAEVWTHNTRAAAVMHVTDEETGSAISDPQRLSIIKELLCNVLGGGNKKRGAKTVVTDEATHTERRLHQMMFADRDYERVNDDDDFAEKQRPNVNVVNWSDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPEAYQEYYIKHIDGSPVKSDAERQRVIQCLAAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVATKGGKAVNTFYVRGASGFPVDSKTIESIRQTIGNTILKVKGSPEEMKSVPQDSPTRSLFSGLFKSRSFVNFGLVKSYS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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