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Report for Sequence Feature Glyma02g13495

Feature Type:gene_model
Chromosome:Gm02
Start:11797927
stop:11801041
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g13495
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G50740AT Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr5:20637148-20637847 REVERSE LENGTH=162 SoyBaseE_val: 1.00E-14ISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF52Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_B9IH20UniRef Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IH20_POPTR SoyBaseE_val: 3.00E-21ISS
UniRef100_F4KAE7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heavy-metal-associated domain--containing protein n=2 Tax=Arabidopsis thaliana RepID=F4KAE7_ARATH SoyBaseE_val: 8.00E-12ISS

Expression Patterns of Glyma02g13495
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g13495 not represented in the dataset
Glyma02g13495 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g13495 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g122100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g13495
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g13495
>Glyma02g13495.1   sequence type=CDS   gene model=Glyma02g13495   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCGAGGCAGAGAACAACGACTTGAAGAAGGAAGAAAACAACAATGATAACAACAACAATAACAATGAAAGTAACAGAAAAATCGGGAATTCAAGAGTGGAGGAGGTGACTGCAGATAGCAAGGCAAGCAAAGTGGTAGTGAAAGGAAAGGCAGCAGACCCCATGAAGGTGTGTGAGAGACTACAAAAGAAAAGTGGCAAGAAAGTAGAGCTCATTTCACCTTTGCCTAAACCTCCAGAGGAGAACAAAGAAGAAGAGATAACCACAACAAGAGGAGAAAAAGGGGGAGGTTATTCAACATTTAACATCGGTGCTTACATCACCAACGATGTTAAAACACACAGATTATTCAACATTTAA
Predicted protein sequences of Glyma02g13495
>Glyma02g13495.1   sequence type=predicted peptide   gene model=Glyma02g13495   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAEAENNDLKKEENNNDNNNNNNESNRKIGNSRVEEVTADSKASKVVVKGKAADPMKVCERLQKKSGKKVELISPLPKPPEENKEEEITTTRGEKGGGYSTFNIGAYITNDVKTHRLFNI*






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