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Report for Sequence Feature Glyma02g13420

Feature Type:gene_model
Chromosome:Gm02
Start:11748591
stop:11753085
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g13420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69120AT Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256 SoyBaseE_val: 4.00E-106ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009556GO-bp Annotation by Michelle Graham. GO Biological Process: microsporogenesis SoyBaseN/AISS
GO:0009827GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0009886GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010076GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of floral meristem identity SoyBaseN/AISS
GO:0010093GO-bp Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity SoyBaseN/AISS
GO:0010582GO-bp Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048440GO-bp Annotation by Michelle Graham. GO Biological Process: carpel development SoyBaseN/AISS
GO:0048441GO-bp Annotation by Michelle Graham. GO Biological Process: petal development SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0048507GO-bp Annotation by Michelle Graham. GO Biological Process: meristem development SoyBaseN/AISS
GO:0052543GO-bp Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0046982GO-mf Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF19Panther MADS BOX PROTEIN JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_E1CKY3UniRef Annotation by Michelle Graham. Most informative UniRef hit: APETALA1 n=1 Tax=Vigna unguiculata RepID=E1CKY3_VIGUN SoyBaseE_val: 7.00E-137ISS
UniRef100_I1JEI8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEI8_SOYBN SoyBaseE_val: 4.00E-180ISS

Expression Patterns of Glyma02g13420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g13420
ParalogEvidenceComments
Glyma01g08150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g13420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g121600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g13420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g13420
>Glyma02g13420.1   sequence type=CDS   gene model=Glyma02g13420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGGTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGGTGGGTTGCTCAAGAAAGCTCATGAAATATCTGTACTCTGTGATGCTGAGGTAGCTTTGATTATCTTCTCTCACAAAGGAAAGCTCTTTGAGTATGCTACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCAGAGAGGCAGCTAGTAGCAAATGATTCTGAGACACAGGAAAACTGGACCATTGAATACACTAGACTGAAGGCAAAAATTGACCTTTTACAGAGAAACCACAGGCACTATATGGGAGAAGATTTGGCTTCAATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAGCAGTTGGTTACTGGTATCAAAAACATCCGCACAAGGAGGAATGATCTCATGTCCGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAAAGGATACAAGAGGAGAATAACACCCTTGCAAAGAAGATCAAGGAGAAAGAGCAGGCTGTAGCACAGCAAGCTGCACAATGGGAGCAGCCAAACTACAGGGTTGATACATCTTTCATGCCACAGCAGCAACCCCTTCCCACCAGTTTGAACATATGTGGCAATAATTACTGCCAGGAAGCTGCACCAGAACTAGGAAGGAACGGTCTAGACCTGACCCTGGAACCACTCTATTCTTGCAACCTTGGATGCTTCTGA
Predicted protein sequences of Glyma02g13420
>Glyma02g13420.1   sequence type=predicted peptide   gene model=Glyma02g13420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIIFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQENWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLVTGIKNIRTRRNDLMSESISELQKKEKRIQEENNTLAKKIKEKEQAVAQQAAQWEQPNYRVDTSFMPQQQPLPTSLNICGNNYCQEAAPELGRNGLDLTLEPLYSCNLGCF*






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