Glyma02g13340 - SoyBase

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Report for Sequence Feature Glyma02g13340

Feature Type:	gene_model
Chromosome:	Gm02
Start:	11617267
stop:	11621460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g13340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36470	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:17215128-17216475 REVERSE LENGTH=371	SoyBase	E_val: 2.00E-167	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity	SoyBase	N/A	ISS
PF03492	PFAM	SAM dependent carboxyl methyltransferase	JGI		ISS
UniRef100_B5A7G4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Salicylic acid methyl transferase-like protein n=1 Tax=Glycine max RepID=B5A7G4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JEI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEI1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g13340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g13340

Paralog	Evidence	Comments
Glyma01g07940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g13340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g121000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g13340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g13340

Limit To All Plant Sequences

>Glyma02g13340.1   sequence type=CDS   gene model=Glyma02g13340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTAGAGAAAGCCTTCCACATGACTGGAGGAGTTGGCAAAACTAGCTATGCCAAGAATTCCTCACTACAGAAGAAGGAATCTGATAAAGTGAAGCACATAATCATACAAACAGTTGAGGAGCTTTACCTTGCAACCACTCCAAAGAGCATAGGCATTGCTGATTTGGGATGTTCCTCTGGACCAAACACCCTATCAATCATCAAAGACATCTTTCAGGCCATCCAAGGCACAAGCCAAAGGATCATGCACCACTCCACAGAGTTCAGGGTGTACTTCAATGATCTTCCAACAAATGACTTCAATTCAATCTTCAAGGCCCTCCCAGAGTTCCAAAAGTTGCTTAGGCAAGACAGGAAAAATGGGTTCCCTTCCATTTTCATGGGAGGCTACCCTGGCTCATTTTATGGAAGACTGTTCCCAAACAGTTACTTGCACTTTGTCCACTCCTCCTTCAGTCTTCACTGGCTTTCAAGGGTTCCTCCATCACTCTATGATGAGCACAAAAGGCCATTGAACAAAGGGTGTGTTTACATTTGTGAATCAAGCCCTGAAGTGGTGTCTCAAGCATACTATCAACAATTCCAAGAAGATTTTTCCTTGTTCCTTAGGTCAAGGTCAGAAGAACTAGTAGTAGGTGGAAGAATGGTGCTGATATTTTTGGGGAGAAGGGGCCCAGAACATGTTGACAGAGGCAACTCTTTCTTCTGGGAGATTCTTTCCCGTTCATTTGCTATTCTAGTCTCACAGGGAGAAGTAGAGCAAGAGAAGTTTGATTCATATGATGTACATTTCTATGCACCATCAAGGGAAGAGATAGAAGAAGAGGTGAGAAAAGAAGGGTCATTGAAGTTGGAGAGGCTAGAGATGTTTGAAATGGACAAGAGTCACAATGAGCATGGAAGTGATGAGAGCTATGGCACACAGGTTGCTGTGGCAGTTAGGGCCATTCAAGAATCAATGATCTCACACCACTTTGGAGAAGGGATCTTGGAAAGTTTGTTTCAGAATTTTGCAAAGTTGGTAGATGAAGAAATGGCTAAGGAGGATATTAGACCAATCTCTTTTGTTCTGGTTCTCAGAAAAATATGA

Predicted protein sequences of Glyma02g13340

Limit To All Plant Sequences

>Glyma02g13340.1   sequence type=predicted peptide   gene model=Glyma02g13340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVEKAFHMTGGVGKTSYAKNSSLQKKESDKVKHIIIQTVEELYLATTPKSIGIADLGCSSGPNTLSIIKDIFQAIQGTSQRIMHHSTEFRVYFNDLPTNDFNSIFKALPEFQKLLRQDRKNGFPSIFMGGYPGSFYGRLFPNSYLHFVHSSFSLHWLSRVPPSLYDEHKRPLNKGCVYICESSPEVVSQAYYQQFQEDFSLFLRSRSEELVVGGRMVLIFLGRRGPEHVDRGNSFFWEILSRSFAILVSQGEVEQEKFDSYDVHFYAPSREEIEEEVRKEGSLKLERLEMFEMDKSHNEHGSDESYGTQVAVAVRAIQESMISHHFGEGILESLFQNFAKLVDEEMAKEDIRPISFVLVLRKI*

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