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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31690 | AT | Annotation by Michelle Graham. TAIR10: Copper amine oxidase family protein | chr1:11343980-11347767 FORWARD LENGTH=677 | SoyBase | E_val: 0 | ISS |
| GO:0009308 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amine metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0008131 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity | SoyBase | N/A | ISS |
| GO:0048038 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: quinone binding | SoyBase | N/A | ISS |
| KOG1186 | KOG | Copper amine oxidase | JGI | ISS | |
| PTHR10638 | Panther | COPPER/TOPAQUINONE OXIDASE | JGI | ISS | |
| PTHR10638:SF12 | Panther | COPPER AMINE OXIDASE | JGI | ISS | |
| PF01179 | PFAM | Copper amine oxidase, enzyme domain | JGI | ISS | |
| PF02727 | PFAM | Copper amine oxidase, N2 domain | JGI | ISS | |
| PF02728 | PFAM | Copper amine oxidase, N3 domain | JGI | ISS | |
| UniRef100_I1JEH6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Amine oxidase n=1 Tax=Glycine max RepID=I1JEH6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JEH6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Amine oxidase n=1 Tax=Glycine max RepID=I1JEH6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g13290 not represented in the dataset |
Glyma02g13290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g07860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g120600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g13290.3 sequence type=transcript gene model=Glyma02g13290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAGCTCAATATAAAGACAGTGAATTCCACAATACTAGCACCATCACCATGAAACTCTTCCACTACCTCTTCTCACTACTCACACTACTCTTCCTCTTCCAAGCCAAAGAAGGAGTTTCCATTAGCCCTTTGCAATTGATCACACACCCACTTGACCCCTTAACAAAGCAAGAAATCACCCTCGTCCAAGCCACAGTCCTAAAGAAATACCCCACACCACCCAACCATGTCTTCTTCCACTACGTCGGCCTCGACGATCCCGACAAGACCCACGTCCTAAAGTGGGCCTCCTCCGGCACCAAAACCCCACCCCAACGCAGCGCCTTCGTTGTAGCCATGGTCAACAACTCCCAAATCCACGAACTCATCATCAACATCAAATCCTCCAACGTTGTCTCGTACAAAATTCACTTGGACCCGGGGTTCCCGACCCTGACGCTGGAAGAACAAAGCTTGGCCATATCGCTGCCGCTAAAGTACGGTCCCTTTGTTGAGTCCATTTAACAAGAGGGGTTTGAACTTGTCGGAGGTGGTGTGCTCCTGCTTCACCGTGGGGTGGTACGGGGAAGCCAAGAGCACTAGGGCTTTGAGGTTGGAGTGTTTTTCCAAGAATGGAACTGCGAATATCTACGTGAGGCCCATTAGTGGCATAAACATTCTCGCTGATCTTGACACAATGAAGATTGTTGAGTACCATGATAACGTTGTTGAGCCTGTTCCTAAGGCGGAGAACACCGAATACCGGGCTTCGCATTTGAAGCCACCGTTCAGTCCACGGCTTCATTCTTTTGCCTCGCATCAACCCGAAGGACCCGGGTTCACTATCAAAGGACATAGTATAAGCTGGGCCAATTGGAAGTTCCACATAGGTTATGATGTGCGAGCTGGTGTGATAATTTCAACTGCATCAATTTACGACCCTGAAGTGCATAAGTCACGTCAAGTATTATACAGAGGGTACATTTCTGAATTATTTGTGCCATATCAAGACCCAGGTGAGGAATGGTATTACAAGACTTTCTTTGATGCTGGTGAATTTGGGTTTGGTCAATCTATGGTTTCTTTGGAACCTTTGCATGATTGTCCACCACAAGCACAGTTCCTAGACGTATATTTTGCGGCAAGTGATGGTAGCCCACAACACTTGGAGAATGCAATTTGTGTGTTTGAACAATATGGTGGTATCAGTTGGCGTCACACTGAATCAGGCATTCCCAATGAGCAAATTCGAGAAGTTAGATCTGATGTGAGTCTAATTGTTAGATCAGTTGTTACCGTTGGCAACTATGACAATGTAATAGATTGGGAGTTCAAGCCAAGTGGTTCAATCAAGCCTTCGATATCACTATCAGGCATTTTGGAAATTAAGGCAGTGGATATTACTCACACAGATCAAATAAAAGATGACCAACATGGCACATTGGTCTCAGAACACAGCATTGGTGTTTACCATGACCATTACTACATATACCATCTTGACTTTGACATTGATGGTGTGGACAACTCTTTTGTGAAGACAAATTTCAAGACTGTGCAAGTCACGGATTACAACAGTTCCAAGAGAAAGAGCTATTGGACAACTAGTAGTGAAGTTGCAAAGACTGAATCTGATGCAAAGACCAAACTAGGGTTCAGCCCTTCAGAGATAGTAATTGTGAACCCTAATAAGAAGACTTCCACTGGAAATGAAGTAGGGTACCGTTTGGTTCCAAATGCAGCATCTCATCCCCTTCTCAGAGAGGATGATTACCCTCAAAGACGTGGTGCTTTCACCAATTACAATGTTTGGGTTACACCTTACAATAAGACTGAGAAGTGGGCTGGTGGACTTTTTGTTGATCAAAGTCATGGAGATGATACTTTGGCTGTTTGGACTAAGCAGAATAGGGGTATTGAGAACAAGGATATTGTGTTGTGGTACGTAGTGGGAATCCACCATGTTCCATGCCAGGAGGATTTTCCAATAATGCCTTTGTTGAGCACCGGATTTGAATTGAGGCCAACTAATTTCTTTGAGAGAAATCCAGTCCTTAAGACCCTTTCTCCAGACATTGTTAAATGGCCTGGTTGTGGGAAGCCATAGATTGGTCACATGTGTGCTATGATGAGAAAATAATAAATTTGAATAAATTAATGATTTCTCTATATCATTGTATTTTCCTATATATTCCTTTGTTTTCTCTACCTTTCAAACAATTTTAAGCGTGCGTGGATTAGAACTTAGAAGAAATAATATTTGACC
>Glyma02g13290.2 sequence type=CDS gene model=Glyma02g13290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACTCTTCCACTACCTCTTCTCACTACTCACACTACTCTTCCTCTTCCAAGCCAAAGAAGGAGTTTCCATTAGCCCTTTGCAATTGATCACACACCCACTTGACCCCTTAACAAAGCAAGAAATCACCCTCGTCCAAGCCACAGTCCTAAAGAAATACCCCACACCACCCAACCATGTCTTCTTCCACTACGTCGGCCTCGACGATCCCGACAAGACCCACGTCCTAAAGTGGGCCTCCTCCGGCACCAAAACCCCACCCCAACGCAGCGCCTTCGTTGTAGCCATGGTCAACAACTCCCAAATCCACGAACTCATCATCAACATCAAATCCTCCAACGTTGTCTCGTACAAAATTCACTTGGACCCGGGGTTCCCGACCCTGACGCTGGAAGAACAAAGCTTGGCCATATCGCTGCCGCTAAAGGGTTTGAACTTGTCGGAGGTGGTGTGCTCCTGCTTCACCGTGGGGTGGTACGGGGAAGCCAAGAGCACTAGGGCTTTGAGGTTGGAGTGTTTTTCCAAGAATGGAACTGCGAATATCTACGTGAGGCCCATTAGTGGCATAAACATTCTCGCTGATCTTGACACAATGAAGATTGTTGAGTACCATGATAACGTTGTTGAGCCTGTTCCTAAGGCGGAGAACACCGAATACCGGGCTTCGCATTTGAAGCCACCGTTCAGTCCACGGCTTCATTCTTTTGCCTCGCATCAACCCGAAGGACCCGGGTTCACTATCAAAGGACATAGTATAAGCTGGGCCAATTGGAAGTTCCACATAGGTTATGATGTGCGAGCTGGTGTGATAATTTCAACTGCATCAATTTACGACCCTGAAGTGCATAAGTCACGTCAAGTATTATACAGAGGGTACATTTCTGAATTATTTGTGCCATATCAAGACCCAGGTGAGGAATGGTATTACAAGACTTTCTTTGATGCTGGTGAATTTGGGTTTGGTCAATCTATGGTTTCTTTGGAACCTTTGCATGATTGTCCACCACAAGCACAGTTCCTAGACGTATATTTTGCGGCAAGTGATGGTAGCCCACAACACTTGGAGAATGCAATTTGTGTGTTTGAACAATATGGTGGTATCAGTTGGCGTCACACTGAATCAGGCATTCCCAATGAGCAAATTCGAGAAGTTAGATCTGATGTGAGTCTAATTGTTAGATCAGTTGTTACCGTTGGCAACTATGACAATGTAATAGATTGGGAGTTCAAGCCAAGTGGTTCAATCAAGCCTTCGATATCACTATCAGGCATTTTGGAAATTAAGGCAGTGGATATTACTCACACAGATCAAATAAAAGATGACCAACATGGCACATTGGTCTCAGAACACAGCATTGGTGTTTACCATGACCATTACTACATATACCATCTTGACTTTGACATTGATGGTGTGGACAACTCTTTTGTGAAGACAAATTTCAAGACTGTGCAAGTCACGGATTACAACAGTTCCAAGAGAAAGAGCTATTGGACAACTAGTAGTGAAGTTGCAAAGACTGAATCTGATGCAAAGACCAAACTAGGGTTCAGCCCTTCAGAGATAGTAATTGTGAACCCTAATAAGAAGACTTCCACTGGAAATGAAGTAGGGTACCGTTTGGTTCCAAATGCAGCATCTCATCCCCTTCTCAGAGAGGATGATTACCCTCAAAGACGTGGTGCTTTCACCAATTACAATGTTTGGGTTACACCTTACAATAAGACTGAGAAGTGGGCTGGTGGACTTTTTGTTGATCAAAGTCATGGAGATGATACTTTGGCTGTTTGGACTAAGCAGAATAGGGGTATTGAGAACAAGGATATTGTGTTGTGGTACGTAGTGGGAATCCACCATGTTCCATGCCAGGAGGATTTTCCAATAATGCCTTTGTTGAGCACCGGATTTGAATTGAGGCCAACTAATTTCTTTGAGAGAAATCCAGTCCTTAAGACCCTTTCTCCAGACATTGTTAAATGGCCTGGTTGTGGGAAGCCATAG >Glyma02g13290.3 sequence type=CDS gene model=Glyma02g13290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGATTGTTGAGTACCATGATAACGTTGTTGAGCCTGTTCCTAAGGCGGAGAACACCGAATACCGGGCTTCGCATTTGAAGCCACCGTTCAGTCCACGGCTTCATTCTTTTGCCTCGCATCAACCCGAAGGACCCGGGTTCACTATCAAAGGACATAGTATAAGCTGGGCCAATTGGAAGTTCCACATAGGTTATGATGTGCGAGCTGGTGTGATAATTTCAACTGCATCAATTTACGACCCTGAAGTGCATAAGTCACGTCAAGTATTATACAGAGGGTACATTTCTGAATTATTTGTGCCATATCAAGACCCAGGTGAGGAATGGTATTACAAGACTTTCTTTGATGCTGGTGAATTTGGGTTTGGTCAATCTATGGTTTCTTTGGAACCTTTGCATGATTGTCCACCACAAGCACAGTTCCTAGACGTATATTTTGCGGCAAGTGATGGTAGCCCACAACACTTGGAGAATGCAATTTGTGTGTTTGAACAATATGGTGGTATCAGTTGGCGTCACACTGAATCAGGCATTCCCAATGAGCAAATTCGAGAAGTTAGATCTGATGTGAGTCTAATTGTTAGATCAGTTGTTACCGTTGGCAACTATGACAATGTAATAGATTGGGAGTTCAAGCCAAGTGGTTCAATCAAGCCTTCGATATCACTATCAGGCATTTTGGAAATTAAGGCAGTGGATATTACTCACACAGATCAAATAAAAGATGACCAACATGGCACATTGGTCTCAGAACACAGCATTGGTGTTTACCATGACCATTACTACATATACCATCTTGACTTTGACATTGATGGTGTGGACAACTCTTTTGTGAAGACAAATTTCAAGACTGTGCAAGTCACGGATTACAACAGTTCCAAGAGAAAGAGCTATTGGACAACTAGTAGTGAAGTTGCAAAGACTGAATCTGATGCAAAGACCAAACTAGGGTTCAGCCCTTCAGAGATAGTAATTGTGAACCCTAATAAGAAGACTTCCACTGGAAATGAAGTAGGGTACCGTTTGGTTCCAAATGCAGCATCTCATCCCCTTCTCAGAGAGGATGATTACCCTCAAAGACGTGGTGCTTTCACCAATTACAATGTTTGGGTTACACCTTACAATAAGACTGAGAAGTGGGCTGGTGGACTTTTTGTTGATCAAAGTCATGGAGATGATACTTTGGCTGTTTGGACTAAGCAGAATAGGGGTATTGAGAACAAGGATATTGTGTTGTGGTACGTAGTGGGAATCCACCATGTTCCATGCCAGGAGGATTTTCCAATAATGCCTTTGTTGAGCACCGGATTTGAATTGAGGCCAACTAATTTCTTTGAGAGAAATCCAGTCCTTAAGACCCTTTCTCCAGACATTGTTAAATGGCCTGGTTGTGGGAAGCCATAG
>Glyma02g13290.2 sequence type=predicted peptide gene model=Glyma02g13290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLFHYLFSLLTLLFLFQAKEGVSISPLQLITHPLDPLTKQEITLVQATVLKKYPTPPNHVFFHYVGLDDPDKTHVLKWASSGTKTPPQRSAFVVAMVNNSQIHELIINIKSSNVVSYKIHLDPGFPTLTLEEQSLAISLPLKGLNLSEVVCSCFTVGWYGEAKSTRALRLECFSKNGTANIYVRPISGINILADLDTMKIVEYHDNVVEPVPKAENTEYRASHLKPPFSPRLHSFASHQPEGPGFTIKGHSISWANWKFHIGYDVRAGVIISTASIYDPEVHKSRQVLYRGYISELFVPYQDPGEEWYYKTFFDAGEFGFGQSMVSLEPLHDCPPQAQFLDVYFAASDGSPQHLENAICVFEQYGGISWRHTESGIPNEQIREVRSDVSLIVRSVVTVGNYDNVIDWEFKPSGSIKPSISLSGILEIKAVDITHTDQIKDDQHGTLVSEHSIGVYHDHYYIYHLDFDIDGVDNSFVKTNFKTVQVTDYNSSKRKSYWTTSSEVAKTESDAKTKLGFSPSEIVIVNPNKKTSTGNEVGYRLVPNAASHPLLREDDYPQRRGAFTNYNVWVTPYNKTEKWAGGLFVDQSHGDDTLAVWTKQNRGIENKDIVLWYVVGIHHVPCQEDFPIMPLLSTGFELRPTNFFERNPVLKTLSPDIVKWPGCGKP* >Glyma02g13290.3 sequence type=predicted peptide gene model=Glyma02g13290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKIVEYHDNVVEPVPKAENTEYRASHLKPPFSPRLHSFASHQPEGPGFTIKGHSISWANWKFHIGYDVRAGVIISTASIYDPEVHKSRQVLYRGYISELFVPYQDPGEEWYYKTFFDAGEFGFGQSMVSLEPLHDCPPQAQFLDVYFAASDGSPQHLENAICVFEQYGGISWRHTESGIPNEQIREVRSDVSLIVRSVVTVGNYDNVIDWEFKPSGSIKPSISLSGILEIKAVDITHTDQIKDDQHGTLVSEHSIGVYHDHYYIYHLDFDIDGVDNSFVKTNFKTVQVTDYNSSKRKSYWTTSSEVAKTESDAKTKLGFSPSEIVIVNPNKKTSTGNEVGYRLVPNAASHPLLREDDYPQRRGAFTNYNVWVTPYNKTEKWAGGLFVDQSHGDDTLAVWTKQNRGIENKDIVLWYVVGIHHVPCQEDFPIMPLLSTGFELRPTNFFERNPVLKTLSPDIVKWPGCGKP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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