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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30000 | AT | Annotation by Michelle Graham. TAIR10: Dihydropterin pyrophosphokinase / Dihydropteroate synthase | chr4:14670524-14672397 REVERSE LENGTH=554 | SoyBase | E_val: 0 | ISS |
| GO:0009396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0042558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pteridine-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003848 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity | SoyBase | N/A | ISS |
| GO:0004156 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dihydropteroate synthase activity | SoyBase | N/A | ISS |
| KOG2544 | KOG | Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase | JGI | ISS | |
| PTHR20941 | Panther | FOLATE SYNTHESIS PROTEINS | JGI | ISS | |
| PTHR20941:SF1 | Panther | DIHYDROPTEROATE SYNTHASE | JGI | ISS | |
| PF00809 | PFAM | Pterin binding enzyme | JGI | ISS | |
| PF01288 | PFAM | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) | JGI | ISS | |
| UniRef100_I1JEH4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEH4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O04862 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dihydropterin pyrophosphokinase /dihydropteroate synthase n=1 Tax=Pisum sativum RepID=O04862_PEA | SoyBase | E_val: 0 | ISS |
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Glyma02g13270 not represented in the dataset |
Glyma02g13270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g07791 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g120400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g13270.3 sequence type=transcript gene model=Glyma02g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCGCCTTTCTCCTATCCACGACAACACGCCCCTACTGTTCAGTCTATTCTAAACCTATCAAAATTCAAAAGTGTCGTTATTGGTCTTGTTTCTCTTCCTGCCTCTGGCTTTGTGTCTAGGAGTGTCCTTCTACCTCTTCCAACCCAGTTCACAGAGATTAAGAATCACAACATAAGCATCTAATTGGTATCTTCAAGGAACATATTTATGATGTATATATGTTGTGGTAACAGTTTTAAATTACAGTCAGCAACAGTAATTTAAAGCTTTCGAGATTGTGACTTGCATCAGTCATATTCATTTGCAATTTTTTTTGGTAATATTTAAGATTTTGGAGGTCTTTGCAACAGTGACTGCAACCGCAATTTAAGACCTTGACATGGGTATTTCCAAGATGAGTATTTTGAAGTGTCTGGGGGAGCCCAGGAATAAGCTTTTTGCTGCCAGAAAGTATCTTGAAGGACTGGGTTTTTCCTCTTTTCACACAGCTTCAAAATCCTCTGTGGAGCTTCACTCACAAGAAGAGGAAGTAGTGATTGCTTTGGGAAGTAATGTAGGTGACAGGCTGCATAACTTCAAGGAAGCCCTGAAATTGATGAGGAACTCAGGCATTAACATCACAAGACATGCTTGCTTGTATGAGACAGCACCAGCATATGTTACTGATCAACCTCGCTTTATCAACTCAGCAGTTAGAGCTGTTACTAAACTCGGTCCACATGAACTATTGTCTGCACTCAAAAAAATTGAGAAGGACTTGGGCCGTACAGGTGGTATACGGTATGGTCCAAGGCCAATTGACTTAGACATTTTATTCTATGGTAAATATAAAGTCAGATCTGATATCCTCACTATACCTCATGAAAGAATTTGGGAAAGGCCATTTGTGATGGCTCCCTTGATGGACTTATTGGGATCAGCTATTGACAGTGACACAGTTGCTTCCTGGCATTCATTTTCAGGCCATTCTCGTGGACTCACTGGATTATGGGAAGATTTAGGGAGTGAATCACTTATTGGAGAGTTTGGAAAGGAAGGAATGTATAGGGTAATGCCTGTTGCAAATGGCTTACTTGACTGGTCGCGGAGAACTTCCGTCATGGGGATCCTTAATGTGACTCCAGATAGTTTTAGTGATGGGGGAAATTTCAAGTCTGTGGAGTCTGCTGTTTATCAGGTTCGGTTAATGATTTCAGAAGGAGCAGATATGATTGATATCGGGGCTCAGTCTACTCGGCCAACGGCCTCTAGGATCTCTGCTGCAGAAGAATTAGGTAGATTAATCCCTGTCCTGGAAGCTGTAGTGTCAATGCCTGAGGTAGAAGGAAAGCTCATTTCTGTGGATACTTTCTACTCTGAAGTTGCTTCAGAAGCAGTGAGTAAAGGGGCTCATCTTATAAATGATGTATCTGCTGGACAGTTGGATAGTAACATGTTTAAAGTCATGGCTGATCTTGATGTTCCTTATGTTGCAATGCACATGAGGGGGGACCCATCTACAATGCAGAATAGTGAAAATCTGAAATATGGTAATGTTTGTAAAGAGATATCATCAGAGCTATACTCGCGGGTTAGAGAGGCAGAGATGTTAGGAATCCCAGCATGGAGGATTATGATTGACCCTGGCATTGGATTCTCAAAGAAAACTGAACACAATTTAGACATTCTCATGGGACTACCTGATATCAGAGAAGAGATTGCCACAAGAAGTTTGGCCATCTCTCATGCTCCCATGCTTATTGGACCCTCAAGAAAGAGATTTTTAGGTGAAATTTGCTCTCGTCCCGACGCAGCCAAGAGGGATCCTTCTACCATTGCTTCAGTCACAGCTGGTGTTTTGGGAGGGGCTAATATTGTTAGGGTGCATAATGTCAAAGATAATCTAGATGCTGTGAAGGTTTGTGATGCAATCCTAAGACAGAAAAGTTCTCACTTGAAATCTAGACATTAGCATATCTGCTGATGATGTTAATTGTCTGTCCACCTCTGGGTATTTGGATTTATGCAGCAACAACTCTGCTAGTGTTGTTGTTTGCTATGTTGCTCATACTCCAAGGTCATATGTAGAACACCACAATGCTGCCAAAGCCGGAACAAAGAAGCATTAAGTACAATGTAGCATTCAATAATCATCATACTATTGTTCGATTCTCAATTTTGTCTATCTTGTATTTATTTCATTCCTTAACATGTGTTTGATTCACGGATTTTATTTCAACCCCATCACTTGTAACTTATTGATTCACAAATGTGTGTTTTGATGAGTGTTGATAAAATTGATTTTGTAAATTTGATTTTTGTTAAAATT
>Glyma02g13270.2 sequence type=CDS gene model=Glyma02g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTATTTCCAAGATGAGTATTTTGAAGTGTCTGGGGGAGCCCAGGAATAAGCTTTTTGCTGCCAGAAAGTATCTTGAAGGACTGGGTTTTTCCTCTTTTCACACAGCTTCAAAATCCTCTGTGGAGCTTCACTCACAAGAAGAGGAAGTAGTGATTGCTTTGGGAAGTAATGTAGGTGACAGGCTGCATAACTTCAAGGAAGCCCTGAAATTGATGAGGAACTCAGGCATTAACATCACAAGACATGCTTGCTTGTATGAGACAGCACCAGCATATGTTACTGATCAACCTCGCTTTATCAACTCAGCAGTTAGAGCTGTTACTAAACTCGGTCCACATGAACTATTGTCTGCACTCAAAAAAATTGAGAAGGACTTGGGCCGTACAGGTGGTATACGGTATGGTCCAAGGCCAATTGACTTAGACATTTTATTCTATGGTAAATATAAAGTCAGATCTGATATCCTCACTATACCTCATGAAAGAATTTGGGAAAGGCCATTTGTGATGGCTCCCTTGATGGACTTATTGGGATCAGCTATTGACAGTGACACAGTTGCTTCCTGGCATTCATTTTCAGGCCATTCTCGTGGACTCACTGGATTATGGGAAGATTTAGGGAGTGAATCACTTATTGGAGAGTTTGGAAAGGAAGGAATGTATAGGGTAATGCCTGTTGCAAATGGCTTACTTGACTGGTCGCGGAGAACTTCCGTCATGGGGATCCTTAATGTGACTCCAGATAGTTTTAGTGATGGGGGAAATTTCAAGTCTGTGGAGTCTGCTGTTTATCAGGTTCGGTTAATGATTTCAGAAGGAGCAGATATGATTGATATCGGGGCTCAGTCTACTCGGCCAACGGCCTCTAGGATCTCTGCTGCAGAAGAATTAGGTAGATTAATCCCTGTCCTGGAAGCTGTAGTGTCAATGCCTGAGGTAGAAGGAAAGCTCATTTCTGTGGATACTTTCTACTCTGAAGTTGCTTCAGAAGCAGTGAGTAAAGGGGCTCATCTTATAAATGATGTATCTGCTGGACAGTTGGATAGTAACATGTTTAAAGTCATGGCTGATCTTGATGTTCCTTATGTTGCAATGCACATGAGGGGGGACCCATCTACAATGCAGAATAGTGAAAATCTGAAATATGGTAATGTTTGTAAAGAGATATCATCAGAGCTATACTCGCGGGTTAGAGAGGCAGAGATGTTAGGAATCCCAGCATGGAGGATTATGATTGACCCTGGCATTGGATTCTCAAAGAAAACTGAACACAATTTAGACATTCTCATGGGACTACCTGATATCAGAGAAGAGATTGCCACAAGAAGTTTGGCCATCTCTCATGCTCCCATGCTTATTGGACCCTCAAGAAAGAGATTTTTAGGTGAAATTTGCTCTCGTCCCGACGCAGCCAAGAGGGATCCTTCTACCATTGCTTCAGTCACAGCTGGTGTTTTGGGAGGGGCTAATATTGTTAGGGTGCATAATGTCAAAGATAATCTAGATGCTGTGAAGGTTTGTGATGCAATCCTAAGACAGAAAAGTTCTCACTTGAAATCTAGACATTAG >Glyma02g13270.3 sequence type=CDS gene model=Glyma02g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTATTTCCAAGATGAGTATTTTGAAGTGTCTGGGGGAGCCCAGGAATAAGCTTTTTGCTGCCAGAAAGTATCTTGAAGGACTGGGTTTTTCCTCTTTTCACACAGCTTCAAAATCCTCTGTGGAGCTTCACTCACAAGAAGAGGAAGTAGTGATTGCTTTGGGAAGTAATGTAGGTGACAGGCTGCATAACTTCAAGGAAGCCCTGAAATTGATGAGGAACTCAGGCATTAACATCACAAGACATGCTTGCTTGTATGAGACAGCACCAGCATATGTTACTGATCAACCTCGCTTTATCAACTCAGCAGTTAGAGCTGTTACTAAACTCGGTCCACATGAACTATTGTCTGCACTCAAAAAAATTGAGAAGGACTTGGGCCGTACAGGTGGTATACGGTATGGTCCAAGGCCAATTGACTTAGACATTTTATTCTATGGTAAATATAAAGTCAGATCTGATATCCTCACTATACCTCATGAAAGAATTTGGGAAAGGCCATTTGTGATGGCTCCCTTGATGGACTTATTGGGATCAGCTATTGACAGTGACACAGTTGCTTCCTGGCATTCATTTTCAGGCCATTCTCGTGGACTCACTGGATTATGGGAAGATTTAGGGAGTGAATCACTTATTGGAGAGTTTGGAAAGGAAGGAATGTATAGGGTAATGCCTGTTGCAAATGGCTTACTTGACTGGTCGCGGAGAACTTCCGTCATGGGGATCCTTAATGTGACTCCAGATAGTTTTAGTGATGGGGGAAATTTCAAGTCTGTGGAGTCTGCTGTTTATCAGGTTCGGTTAATGATTTCAGAAGGAGCAGATATGATTGATATCGGGGCTCAGTCTACTCGGCCAACGGCCTCTAGGATCTCTGCTGCAGAAGAATTAGGTAGATTAATCCCTGTCCTGGAAGCTGTAGTGTCAATGCCTGAGGTAGAAGGAAAGCTCATTTCTGTGGATACTTTCTACTCTGAAGTTGCTTCAGAAGCAGTGAGTAAAGGGGCTCATCTTATAAATGATGTATCTGCTGGACAGTTGGATAGTAACATGTTTAAAGTCATGGCTGATCTTGATGTTCCTTATGTTGCAATGCACATGAGGGGGGACCCATCTACAATGCAGAATAGTGAAAATCTGAAATATGGTAATGTTTGTAAAGAGATATCATCAGAGCTATACTCGCGGGTTAGAGAGGCAGAGATGTTAGGAATCCCAGCATGGAGGATTATGATTGACCCTGGCATTGGATTCTCAAAGAAAACTGAACACAATTTAGACATTCTCATGGGACTACCTGATATCAGAGAAGAGATTGCCACAAGAAGTTTGGCCATCTCTCATGCTCCCATGCTTATTGGACCCTCAAGAAAGAGATTTTTAGGTGAAATTTGCTCTCGTCCCGACGCAGCCAAGAGGGATCCTTCTACCATTGCTTCAGTCACAGCTGGTGTTTTGGGAGGGGCTAATATTGTTAGGGTGCATAATGTCAAAGATAATCTAGATGCTGTGAAGGTTTGTGATGCAATCCTAAGACAGAAAAGTTCTCACTTGAAATCTAGACATTAG
>Glyma02g13270.2 sequence type=predicted peptide gene model=Glyma02g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGISKMSILKCLGEPRNKLFAARKYLEGLGFSSFHTASKSSVELHSQEEEVVIALGSNVGDRLHNFKEALKLMRNSGINITRHACLYETAPAYVTDQPRFINSAVRAVTKLGPHELLSALKKIEKDLGRTGGIRYGPRPIDLDILFYGKYKVRSDILTIPHERIWERPFVMAPLMDLLGSAIDSDTVASWHSFSGHSRGLTGLWEDLGSESLIGEFGKEGMYRVMPVANGLLDWSRRTSVMGILNVTPDSFSDGGNFKSVESAVYQVRLMISEGADMIDIGAQSTRPTASRISAAEELGRLIPVLEAVVSMPEVEGKLISVDTFYSEVASEAVSKGAHLINDVSAGQLDSNMFKVMADLDVPYVAMHMRGDPSTMQNSENLKYGNVCKEISSELYSRVREAEMLGIPAWRIMIDPGIGFSKKTEHNLDILMGLPDIREEIATRSLAISHAPMLIGPSRKRFLGEICSRPDAAKRDPSTIASVTAGVLGGANIVRVHNVKDNLDAVKVCDAILRQKSSHLKSRH* >Glyma02g13270.3 sequence type=predicted peptide gene model=Glyma02g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGISKMSILKCLGEPRNKLFAARKYLEGLGFSSFHTASKSSVELHSQEEEVVIALGSNVGDRLHNFKEALKLMRNSGINITRHACLYETAPAYVTDQPRFINSAVRAVTKLGPHELLSALKKIEKDLGRTGGIRYGPRPIDLDILFYGKYKVRSDILTIPHERIWERPFVMAPLMDLLGSAIDSDTVASWHSFSGHSRGLTGLWEDLGSESLIGEFGKEGMYRVMPVANGLLDWSRRTSVMGILNVTPDSFSDGGNFKSVESAVYQVRLMISEGADMIDIGAQSTRPTASRISAAEELGRLIPVLEAVVSMPEVEGKLISVDTFYSEVASEAVSKGAHLINDVSAGQLDSNMFKVMADLDVPYVAMHMRGDPSTMQNSENLKYGNVCKEISSELYSRVREAEMLGIPAWRIMIDPGIGFSKKTEHNLDILMGLPDIREEIATRSLAISHAPMLIGPSRKRFLGEICSRPDAAKRDPSTIASVTAGVLGGANIVRVHNVKDNLDAVKVCDAILRQKSSHLKSRH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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