Glyma02g13180 - SoyBase

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Report for Sequence Feature Glyma02g13180

Feature Type:	gene_model
Chromosome:	Gm02
Start:	11405426
stop:	11408052
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g13180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26355	AT	Annotation by Michelle Graham. TAIR10: SPIRAL1-like1 \| chr1:9117950-9118611 REVERSE LENGTH=113	SoyBase	E_val: 3.00E-35	ISS
UniRef100_B3H4F1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein SPIRAL1-like 1 n=1 Tax=Arabidopsis thaliana RepID=SP1L1_ARATH	SoyBase	E_val: 2.00E-32	ISS
UniRef100_I1JEG3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JEG3_SOYBN	SoyBase	E_val: 7.00E-69	ISS

Expression Patterns of Glyma02g13180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g13180 not represented in the dataset	Glyma02g13180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g13180

Paralog	Evidence	Comments
Glyma01g07554	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g13180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g119200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g13180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g13180

Limit To All Plant Sequences

>Glyma02g13180.5   sequence type=transcript   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTTCCCAGATCTGCTCCTTCCTCACCCCACAGTTGAAGAGCATGGGTCGTGGAGTTAGCAGTGGTGGTGGTCAAAGTTCCTTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCTGCCGCAAAACCGGCAACAAACAATGCCCCAGCCCAACCTGAAGTGCAGGCTGTAAATAATGCGCCTCCTTCAAAAGCATCTCCTCCTACTAAAACAATAGACCCTAACAAGGCTGCTGGTATAAACAGTCATTCTACTGATGGCCAGAACACCGGCAACTTCATCACGGACCGACCCTCAACCAAGGTCCATGCTGCCCCTGGTGGTGGTTCTTCTCTGAGTTATCTCTTTGGTGGACCTGGAGAGGGGAAATGATACCTTGCTTGCAAAGCTTTTGCTCGATGAACGATTTATTTTGGAAATTCAGGTCGTGGAAACATAATAGAAGATATGGTGTATTGTAGGTTATGGTTGCTTGGATAATTGGGTCAAGAGTGCTATATTTTGGATGTGCTAAACATCTATTACAGAACTTTGTTTGACAGAAACTAAAATTTCTATTAAGTGCTCATTTGCTTAAACTTTGTATTTCTTGTTTTCCTAGTTATTTATTTAATCTGTTATCATGCACGGATTATTTTTAAGGATACGAAAACTCATGCTGAAATCCAGGCATAATTTTGGTTAGTAAAATGAACAGTGAGTAACAC

>Glyma02g13180.6   sequence type=transcript   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCCTGGCCATCCGGTTTCCCAGATCTGCTCCTTCCTCACCCCACAGTCAGTTGAAGAGCATGGGTCGTGGAGTTAGCAGTGGTGGTGGTCAAAGTTCCTTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCTGCCGCAAAACCGGCAACAAACAATGCCCCAGCCCAACCTGAAGTGCAGGCTGTAAATAATGCGCCTCCTTCAAAAGCATCTCCTCCTACTAAAACAATAGACCCTAACAAGGCTGCTGGTATAAACAGTCATTCTACTGATGGCCAGAACACCGGCAACTTCATCACGGACCGACCCTCAACCAAGGTCCATGCTGCCCCTGGTGGTGGTTCTTCTCTGAGTTATCTCTTTGGTGGACCTGGAGAGGGGAAATGATACCTTGCTTGCAAAGCTTTTGCTCGATGAACGATTTATTTTGGAAATTCAGGTCGTGGAAACATAATAGAAGATATGGTGTATTGTAGGTTATGGTTGCTTGGATAATTGGGTCAAGAGTGCTATATTTTGGATGTGCTAAACATCTATTACAGAACTTTGTTTGACAGAAACTAAAATTTCTATTAAGTGCTCATTTGCTTAAACTTTGTATTTCTTGTTTTCCTAGTTATTTATTTAATCTGTTATCATGCACGGATTATTTTTAAGGATACGAAAACTCATGCTGAAATCCAGGCATAATTTTGGTTAGTAAAATGAACAGTGAGTAACAC

>Glyma02g13180.7   sequence type=transcript   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAGGGTTATTTATAAGGCACACATCTCATCGTTTTCTCTGTGCCTGGCCATCCGGTTTCCCAGATCTGCTCCTTCCTCACCCCACAGGCTGATACTAGACTGTAACTTTCAGAAGTCAGTTGAAGAGCATGGGTCGTGGAGTTAGCAGTGGTGGTGGTCAAAGTTCCTTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCTGCCGCAAAACCGGCAACAAACAATGCCCCAGCCCAACCTGAAGTGCAGGCTGTAAATAATGCGCCTCCTTCAAAAGCATCTCCTCCTACTAAAACAATAGACCCTAACAAGGCTGCTGGTATAAACAGTCATTCTACTGATGGCCAGAACACCGGCAACTTCATCACGGACCGACCCTCAACCAAGGTCCATGCTGCCCCTGGTGGTGGTTCTTCTCTGAGTTATCTCTTTGGTGGACCTGGAGAGGGGAAATGATACCTTGCTTGCAAAGCTTTTGCTCGATGAACGATTTATTTTGGAAATTCAGGTCGTGGAAACATAATAGAAGATATGGTGTATTGTAGGTTATGGTTGCTTGGATAATTGGGTCAAGAGTGCTATATTTTGGATGTGCTAAACATCTATTACAGAACTTTGTTTGACAGAAACTAAAATTTCTATTAAGTGCTCATTTGCTTAAACTTTGTATTTCTTGTTTTCCTAGTTATTTATTTAATCTGTTATCATGCACGGATTATTTTTAAGGATACGAAAACTCATGCTGAAATCCAGGCATAATTTTGGTTAGTAAAATGAACAGTGAGTAACAC

Coding sequences of Glyma02g13180

Limit To All Plant Sequences

>Glyma02g13180.2   sequence type=CDS   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGTGGAGTTAGCAGTGGTGGTGGTCAAAGTTCCTTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCTGCCGCAAAACCGGCAACAAACAATGCCCCAGCCCAACCTGAAGTGCAGGCTGTAAATAATGCGCCTCCTTCAAAAGCATCTCCTCCTACTAAAACAATAGACCCTAACAAGGCTGCTGGTATAAACAGTCATTCTACTGATGGCCAGAACACCGGCAACTTCATCACGGTATTAACTTATATTTAA

>Glyma02g13180.5   sequence type=CDS   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGTGGAGTTAGCAGTGGTGGTGGTCAAAGTTCCTTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCTGCCGCAAAACCGGCAACAAACAATGCCCCAGCCCAACCTGAAGTGCAGGCTGTAAATAATGCGCCTCCTTCAAAAGCATCTCCTCCTACTAAAACAATAGACCCTAACAAGGCTGCTGGTATAAACAGTCATTCTACTGATGGCCAGAACACCGGCAACTTCATCACGGACCGACCCTCAACCAAGGTCCATGCTGCCCCTGGTGGTGGTTCTTCTCTGAGTTATCTCTTTGGTGGACCTGGAGAGGGGAAATGA

>Glyma02g13180.6   sequence type=CDS   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGTGGAGTTAGCAGTGGTGGTGGTCAAAGTTCCTTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCTGCCGCAAAACCGGCAACAAACAATGCCCCAGCCCAACCTGAAGTGCAGGCTGTAAATAATGCGCCTCCTTCAAAAGCATCTCCTCCTACTAAAACAATAGACCCTAACAAGGCTGCTGGTATAAACAGTCATTCTACTGATGGCCAGAACACCGGCAACTTCATCACGGACCGACCCTCAACCAAGGTCCATGCTGCCCCTGGTGGTGGTTCTTCTCTGAGTTATCTCTTTGGTGGACCTGGAGAGGGGAAATGA

>Glyma02g13180.7   sequence type=CDS   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGTGGAGTTAGCAGTGGTGGTGGTCAAAGTTCCTTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCTGCCGCAAAACCGGCAACAAACAATGCCCCAGCCCAACCTGAAGTGCAGGCTGTAAATAATGCGCCTCCTTCAAAAGCATCTCCTCCTACTAAAACAATAGACCCTAACAAGGCTGCTGGTATAAACAGTCATTCTACTGATGGCCAGAACACCGGCAACTTCATCACGGACCGACCCTCAACCAAGGTCCATGCTGCCCCTGGTGGTGGTTCTTCTCTGAGTTATCTCTTTGGTGGACCTGGAGAGGGGAAATGA

Predicted protein sequences of Glyma02g13180

Limit To All Plant Sequences

>Glyma02g13180.2   sequence type=predicted peptide   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGVSSGGGQSSLGYLFGSGEAPAAKPATNNAPAQPEVQAVNNAPPSKASPPTKTIDPNKAAGINSHSTDGQNTGNFITVLTYI*

>Glyma02g13180.5   sequence type=predicted peptide   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGVSSGGGQSSLGYLFGSGEAPAAKPATNNAPAQPEVQAVNNAPPSKASPPTKTIDPNKAAGINSHSTDGQNTGNFITDRPSTKVHAAPGGGSSLSYLFGGPGEGK*

>Glyma02g13180.6   sequence type=predicted peptide   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGVSSGGGQSSLGYLFGSGEAPAAKPATNNAPAQPEVQAVNNAPPSKASPPTKTIDPNKAAGINSHSTDGQNTGNFITDRPSTKVHAAPGGGSSLSYLFGGPGEGK*

>Glyma02g13180.7   sequence type=predicted peptide   gene model=Glyma02g13180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGVSSGGGQSSLGYLFGSGEAPAAKPATNNAPAQPEVQAVNNAPPSKASPPTKTIDPNKAAGINSHSTDGQNTGNFITDRPSTKVHAAPGGGSSLSYLFGGPGEGK*

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